Job Description P33590 Confidence 100.00% Date Thu Jan 5 11:52:15 GMT 2012 Rank 2 Aligned Residues 493 % Identity 20% Template d1xoca1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		A	A	A	P	D	E	I	T	T	A	W	P	V	N	V	G	P	L	N	P	H	L	Y	T	P	N	.	Q	M	F	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	A	D	G	S	V	I	P	W	L	A	K	S	W	T	H	S	E	D	G	K	T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	P
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		P	Q	Q	G	G	D	L	V	V	G	S	I	G	E	P	T	L	F	N	S	L	Y	S	T	D	D	A	S	T	D	I	E	N	M	L	Y	S	F	L	T	K	T	D	E	K	L	N	V	K	L	S	L	A	E	S	I	K	E	L	D	G	G	L	A	Y	D	V	K	I	K	K	G	V	K	F	H	D	G	K	E
Template Known Secondary structure													S	S					S		T	T	T			S														S					T	T	S					S	S								G	G	G	T								S	S		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		F	D	A	E	A	A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	E	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	A	L	P	R	P	F	R	F	I	.	.	.	.	A	P	S	Q	F	K	N	H	E	T	M	N
Query Conservation																																																																		.	.	.	.
Alig confidence																																																																		.	.	.	.
Template Conservation
Template Sequence		L	T	A	D	D	V	V	F	T	Y	S	V	P	L	S	K	D	Y	K	G	E	R	G	S	T	Y	E	M	L	K	S	V	E	K	K	G	D	Y	E	V	L	F	K	L	K	Y	K	D	G	N	F	Y	N	N	A	L	D	S	T	A	I	L	P	K	H	I	L	G	N	V	P	I	A	D	L	E	E	N	E	F
Template Known Secondary structure													G	G	G	S	T	T				S		G	G	G	T	T	T									T	T							S	S			T					T														T	T	S		G	G	G	T	T	T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K	A	P	I	G	T	G	P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	G	E	K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G	N	E	G	L	L	P	L	D	T	F	A	R	F	S	Q
Query Conservation
Alig confidence																																																																		.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		N	R	K	K	P	I	G	S	G	P	F	K	F	K	E	W	K	Q	G	Q	Y	I	K	L	E	A	N	D	D	Y	F	E	G	R	P	Y	L	D	T	V	T	Y	K	V	I	P	D	A	N	A	A	E	A	Q	L	Q	A	G	D	I	N	F	F	N	.	.	.	.	.	V	P	A	T	D	Y	K	T	A	E	K
Template Known Secondary structure		G	T	T					S	S	S								T	T	T								T	T		T	T				S	S	S								S												T	S			B			.	.	.	.	.			G	G	G					T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		N	P	A	Y	H	T	Q	L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y	A	.	.	N	L	G	L	K	P	S	Q	Y	D	P
Query Conservation																																																																					.	.
Alig confidence																																																																					.	.
Template Conservation
Template Sequence		F	N	N	L	K	I	V	T	D	L	A	L	S	Y	V	Y	I	G	W	N	E	K	N	E	L	F	K	D	K	K	V	R	Q	A	L	T	T	A	L	D	R	E	S	I	V	S	Q	V	L	D	G	D	G	E	V	A	Y	I	P	E	S	P	L	S	W	N	Y	P	K	D	I	D	V	P	K	F	E	Y	N	E
Template Known Secondary structure		S	T	T									S									T	T	S	G	G	G												T											S	T	T		S					S	S	S		T	T	S	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		Q	K	A	K	A	L	L	E	K	A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S	I	Y	A	R	Q	R	.	.	D	G	R	F
Query Conservation																																																																												.	.
Alig confidence																																																																												.	.
Template Conservation
Template Sequence		K	K	A	K	Q	M	L	A	E	A	G	W	K	D	T	N	G	D	G	I	L	D	K	D	G	K	K	F	S	F	T	L	K	T	N	Q	G	N	K	V	R	E	D	I	A	V	V	V	Q	E	Q	L	K	K	I	G	I	E	V	K	T	Q	I	V	E	W	S	A	L	V	E	Q	M	N	P	P	N	W	D	F
Template Known Secondary structure											T	T		B		S	S	S	S	S	S				T	T											T	T																	T	T	T																		S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		413	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	M	I	F	H	R	T	W	.	G	A	P	Y	D	P	H	A	F	L	S	S	M	R	V	P	S	H	A	D	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H	D	E	A	V	Y	L	P	I	S	Y
Query Conservation										.
Alig confidence										.														.	.	.	.
Template Conservation																								.	.	.	.
Template Sequence		D	A	M	V	M	G	W	S	L	S	T	F	P	D	Q	Y	D	I	F	H	S	S	.	.	.	.	Q	I	K	K	G	L	N	Y	V	W	Y	K	N	A	E	A	D	K	L	M	K	D	A	K	S	I	S	D	R	K	Q	Y	S	K	E	Y	E	Q	I	Y	Q	K	I	A	E	D	Q	P	Y	T	F	L	Y	Y
Template Known Secondary structure		S										S	S			T					S	G	G	.	.	.	.	G	T	T	T	S	S		T	T															T	T			S																				S
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	M	M	V	V	S	K	P	E	L	G	N	I	P	Y	A	P	I	A	T	E	I	P	F	E	Q	I	K	P	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	N	H	M	A	M	P	E	N	L	E	G	Y	K	Y	H	P	K	R	D	L	Y	N	I	E	K	W	W	L	A	K
Template Known Secondary structure										T	T			S					S	S		T	T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520