Return to main results Retrieve Phyre Job Id

Job DescriptionP33590
Confidence100.00%DateThu Jan 5 11:52:15 GMT 2012
Rank3Aligned Residues483
% Identity26%Templated1dpea_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50 .........60... ......70.........80.........90.........
Predicted Secondary structure 












..



.
















...
Query SS confidence 
























. .












.



































. . .
Query Sequence  DEITTAWPVNVGPLNPHLYTPNQMF. . AQSMVYEPLVKYQ. ADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGE. . .
Query Conservation   

  
      



         ..    
   
   
.  
   
 

 
   
 
  
 

 

  
 



 ...
Alig confidence 
























..












.



































...
Template Conservation   

       
 



               
 
 
   
   
   
 

     
 
    

 

    



    
Template Sequence  KTLVYCSEGSPEGFNPQLFISGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFK
Template Known Secondary structure 
SS

S
S
GGG


T


S
TTSS
SS
TTS

SS





SS

Template Predicted Secondary structure 





































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   100.........110.........120.. .......130.........140.........150.........160.....
Predicted Secondary structure  ...









...........
















Query SS confidence  . . .






















. . . . . . . . . . .










































Query Sequence  . . . PFDAEAAAENFRAVLDNRQRHAW. . . . . . . . . . . LELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIA
Query Conservation  ...



 

  
             ...........      
  
   

 

 
 
  
       

         
Alig confidence  ...






















...........










































Template Conservation     



 

  
                              
  
   

 

 
 
  
       
      
 
 
Template Sequence  PTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSK
Template Known Secondary structure 
SS



TTSTTTTGGG


TTTTSS

TTTTSGGG



Template Predicted Secondary structure 











































Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   166...170 .........180.........190.........200.........210.........220.........230.........240..
Predicted Secondary structure 
...








































Query SS confidence 




. . .







































































Query Sequence  PSQFK. . . NHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGN
Query Conservation       ...           





 
          
  
  
       
 
             

  



     
Alig confidence 




...






































































.
Template Conservation                     





 
          
  
  
         
                 
  
    .
Template Sequence  EYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPY.
Template Known Secondary structure  TT
TTS


SSSTTT
TT
SS


S
S


TTS
SB
SS.
Template Predicted Secondary structure 





































.
Template SS confidence 















































































   161........170.........180.........190.........200.........210.........220.........230.........
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  EGLLPLDTFARFSQNPAYHTQLSQPIETVMLALNTAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPY
Query Conservation                                
  
       
  

 

  



  
      
               
Alig confidence  ...












































































Template Conservation  ...                           
  
       
  

 

  



  
      
               
Template Sequence  . . . PNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWG
Template Known Secondary structure  ...

GGG
TT
S
TTSTTTTSTS
TTS
SSSS
TTSTT
Template Predicted Secondary structure  ...

































Template SS confidence 















































































   240.........250.........260.........270.........280.........290.........300.........310......
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  ANLGLKPSQYDPQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESS
Query Conservation            
   
  

 


             
      
            
  
   
   

 
 
       
Alig confidence 































........







































Template Conservation            
   
  

  

         ........                
  
   
   

 
 
       
Template Sequence  YNDDVQDYTYDPEKAKALLKEAGLEKGFSIDL. . . . . . . . WAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGE
Template Known Secondary structure 

TT






TT
TT
........

SS
BTTBS
TTT


Template Predicted Secondary structure 




















........








Template SS confidence 















































































   317..320.........330.........340........ .350.........360.........370.........380........
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  IYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHD
Query Conservation            
            
   
             
         
 

       
   
          
  
Alig confidence 















































































Template Conservation            
            
                 
         
 

       
              
  
Template Sequence  YLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHD
Template Known Secondary structure  TT

S
SSS
TST

TT






Template Predicted Secondary structure 





























Template SS confidence 















































































   389390.........400.........410.........420.........430.........440.........450.........460........
 
   483......490.........500.........510.........520.
Predicted Secondary structure 
















Query SS confidence 






































Query Sequence  EAVYLPISYISMMVVSKPELGNIPYAPIATEIPFEQIKP
Query Conservation    
 


            
 
    
         
  
Alig confidence 





























.







Template Conservation    
 


            
 
      
 .     
  
Template Sequence  QAPALIIAHSTVFEPVRKEVKGYVVDPLGK. HHFENVSI
Template Known Secondary structure 
STTS



TTS
.


TT
Template Predicted Secondary structure 











.
Template SS confidence 






































   469470.........480.........490........ .500......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions