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Job DescriptionP33590
Confidence100.00%DateThu Jan 5 11:52:15 GMT 2012
Rank8Aligned Residues473
% Identity24%Templatec3t66A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PDEITTAWPVNVGPLNPHLYTPNQMFAQSMVYEPLVKYQADG. SVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDA
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Template Sequence  EKHIHFLFNVSTNSLDPHV. DMTYIPVRAGITETLVRVDEENVTIAPWLAESWD. STDGQHWTIKLREDVTFQNGKEMDA
Template Known Secondary structure 

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S


TTT.
SS
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   12.......20.........30 .........40.........50.........60.... .....70.........80.........
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  EAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGIKAPIG
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Template Sequence  EAVKASLERALDES. . . VAIENALKIDEIEA. DGYTLHITTKEPFPEFISELVNPNVSIIDV. . . . . . . TEEDFTNHPVG
Template Known Secondary structure  TT
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TTTGGGGGSGGG
BB
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TTT


B
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   90.........100... ......110....... ..120.........130.........140....... ..150........
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  TGPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQ
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Template Sequence  TGPFALESFTPGSKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYR. . . . PEVESIETLQANEGIMVE
Template Known Secondary structure  SSSTTT
TT
TT


S
S


TTS
SS....

TTTSTT
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   159160.........170.........180.........190.........200.........210...... ...220.........230....
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
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Query Sequence  LSQPIETVMLALNTAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEK
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Template Sequence  ATETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTIMLGYAEVADGPFIPTLPFA. PSYEKKETGTDIAIQYLEE
Template Known Secondary structure 
S
TTSTGGGSS
TTTTS
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   235....240.........250.........260.........270.........280.........290.... .....300.........310...
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  AGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAP
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Template Sequence  AGYT. . . LENQMQKDGEPLHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPR
Template Known Secondary structure  T
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TT

SSSTTTT

SSSTT
TT

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   314... ..320.........330.........340.........350.........360.........370.........380.........390
 
   424.....430.........440.........450.........460.........470.........480.........490.........500. .
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Query Sequence  YDPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPE. L
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Template Sequence  GDAGYYLNATY. . . HPTGALNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENKV
Template Known Secondary structure  S

...STT
TT

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TT
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   392.......400.. .......410.........420.........430.........440.........450.........460........
 
   503......510.........520.
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Query Sequence  GNIPYAPIATEIPFEQIKP
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Template Sequence  KNWVTTRSEYYMITNQLDV
Template Known Secondary structure  B




SSS


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TT
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   469470.........480.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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