Job Description P33590 Confidence 100.00% Date Thu Jan 5 11:52:15 GMT 2012 Rank 16 Aligned Residues 468 % Identity 21% Template c3ry3B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. Resolution 2.43 Å

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		27	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		E	I	T	T	A	W	P	V	N	V	.	G	P	L	N	P	H	L	Y	T	P	N	Q	M	F	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	A	D	G	S	V	I	P	W	L	A	K	S	W	T	H	S	E	D	G	K	T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	P	F	D	A	E	A
Query Conservation												.
Alig confidence												.													.	.
Template Conservation																									.	.
Template Sequence		T	L	Q	L	A	I	G	D	E	P	T	E	G	F	D	P	X	L	G	W	S	H	G	.	.	S	Y	L	L	L	H	S	P	L	L	K	Q	N	E	D	F	S	W	D	S	L	L	L	S	Q	Y	Q	P	S	D	D	G	K	T	W	L	L	T	L	K	P	D	L	K	F	S	D	G	S	P	L	T	A	K	D
Template Known Secondary structure								S				S	S				G	G	G		S	S	S	S	.	.	T								S					T	T	S					S	S								T	T	S	S								T	T		B		T	T	S		B
Template Predicted Secondary structure																									.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	E	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	A	L	P	R	P	F	R	F	I	A	P	S	Q	F	K	N	H	E	T	M	N	G	I	K	A	P	I	G	T	G
Query Conservation
Alig confidence																.	.	.	.	.	.																																								.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.																																								.	.	.	.	.	.
Template Sequence		V	A	F	T	Y	N	N	A	A	A	G	K	V	D	.	.	.	.	.	.	X	G	N	F	L	S	A	E	V	I	D	P	L	N	V	R	I	H	L	K	A	P	Q	S	T	F	V	N	V	L	G	S	L	G	I	V	S	A	D	.	.	.	.	.	.	K	Y	N	A	K	T	Y	A	Q	K	P	I	G	A	G
Template Known Secondary structure										T				S		.	.	.	.	.	.		S	S									T	T							S	S			T	T						T	T	S					S	T	.	.	.	.	.	.	T			T	T	T	T	T	T	S				S	S
Template Predicted Secondary structure																.	.	.	.	.	.																																								.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	G	E	K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G	N	E	G	L	L	P	L	D	T	F	A	R	F	S	Q	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																						.																				.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation																																						.																				.	.	.	.
Template Sequence		P	Y	R	L	V	S	F	Q	P	G	Q	Q	X	I	V	E	A	N	P	Y	Y	A	G	N	K	N	D	F	D	K	L	I	F	V	F	L	.	D	E	D	S	A	F	A	A	A	Q	S	G	Q	L	G	V	V	R	I	.	.	.	.	P	P	S	X	A	V	G	S	V	N	N	X	K	L	W	V	R	P	S	V
Template Known Secondary structure		S								T	T	T								T	T		S	S				S		S								.											T	T			S					.	.	.	.		T	T	S						T	T								B
Template Predicted Secondary structure																																						.																				.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
			257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	P	A	Y	H	T	Q	L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y	A	N	L	G	L	K	P	S	Q	Y	D	P	Q
Query Conservation		.
Alig confidence		.																																																																.
Template Conservation																																																																		.
Template Sequence		E	N	R	G	I	V	F	P	T	T	P	A	G	K	K	D	A	H	G	Y	P	I	G	N	D	V	T	A	D	V	A	I	R	R	A	I	N	Y	A	I	N	R	Q	L	L	A	D	Q	I	X	E	G	H	A	I	P	A	Y	T	G	V	Q	G	L	.	P	W	N	N	P	D	S	A	I	K	D	G	D	I	D
Template Known Secondary structure											S		S					T	T	S						T	T	T	T	S																					S	T	T						S	S	T	T	T	T	S	.	T	T	S		T	T						S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	K	A	L	L	E	K	A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S	I	Y	A	R	Q	R	D	G	R	F	G	M	I
Query Conservation
Alig confidence													.																																																												.	.	.
Template Conservation													.																																																												.	.	.
Template Sequence		K	A	K	Q	I	L	E	Q	A	G	W	.	Q	L	N	S	Q	G	T	R	E	K	N	G	L	P	A	K	I	T	L	W	Y	T	S	G	D	T	T	R	R	D	L	A	Q	A	L	R	S	X	L	K	P	I	G	I	D	V	D	L	K	S	G	S	W	E	T	V	E	R	N	.	.	.	X	H	A	N	P	T
Template Known Secondary structure										T	T		.				T	T	S	S				T	T											S	S																G	G	G	T																	.	.	.	T	T	T	S
Template Predicted Secondary structure													.																																																												.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.				.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.							.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.
Query Sequence		F	H	R	T	W	G	A	P	Y	D	P	H	A	F	L	S	S	M	R	V	P	S	H	A	D	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	.	.	.	.	.	.	T	R	L	H	D	E	A	V	Y	L	P	I
Query Conservation																																																																.	.	.	.	.	.
Alig confidence						.	.																																																									.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		L	F	G	W	.	.	G	S	L	D	P	X	E	L	Y	H	H	Y	S	S	N	A	A	G	V	E	Y	Y	N	P	G	Y	Y	K	N	P	X	V	D	K	H	L	Q	Q	A	L	D	A	P	T	W	Q	Q	A	V	P	F	W	Q	Q	V	D	W	D	G	T	T	G	A	G	I	R	G	D	A	A	W	A	W	L
Template Known Secondary structure						.	.			S	S	T									G	G	G	T	T	S	T	T	S	S	T	T																		S	S										T	T	T			S	S			S	S	T	T	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		408	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.			.	.	.	.	520
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		S	Y	I	S	M	M	V	V	S	K	P	E	L	G	N	I	P	Y	A	P	I	A	T	E	I	P	.	.	F	E	Q	I	K
Query Conservation																												.	.
Alig confidence																												.	.
Template Conservation
Template Sequence		L	N	I	Q	H	T	Y	L	A	N	N	C	V	D	L	G	K	G	T	P	E	I	H	G	S	W	S	L	L	N	S	I	D
Template Known Secondary structure												T	T							S		B		S	S	T	T	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.