Job Description P33590 Confidence 100.00% Date Thu Jan 5 11:52:15 GMT 2012 Rank 20 Aligned Residues 219 % Identity 17% Template c3pamB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1 Resolution 2.31 Å

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		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	X	G	F	V	F	N	T	R	R	T	L	F	K	D	K	R	V	R	Q	A	L	S	I	L	F	D	F	E	W	V	N	H	H	L	F	N	N	I	Y	T	R	T	E	G	Y	W	D	G	S	I	L	S	S	I	G	K	P	A	S	E	E	E	K	A	L	L	A	P	Y	P	D	A	V	L	P	E	V	X	D
Template Known Secondary structure									T	T	S	G	G	G	S	S																				T	T	T	T							S	S	S	T	T	S	T	T			S	S	S											T	T		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	L	G	L	K	P	S	Q	Y	D	P	Q	K	A	K	A	L	L	E	K	A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S
Query Conservation
Alig confidence																													.																					.	.
Template Conservation																													.																					.	.
Template Sequence		G	S	W	R	I	S	K	D	R	L	N	A	Q	K	A	W	K	L	L	Q	E	A	G	F	T	K	K	.	N	N	R	L	I	A	P	N	G	L	P	F	Q	F	E	I	X	T	Q	S	.	.	L	E	E	E	K	V	A	L	A	F	Q	S	N	L	S	R	L	G	I	H	A	E	I	R	T	V	D	D	S	Q
Template Known Secondary structure		T																					T	T					.	T	T					T	T	S		B								S	S	.	.																T	T	T
Template Predicted Secondary structure																													.																					.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		I	Y	A	R	Q	R	D	G	R	F	G	M	I	F	H	R	T	W	G	A	P	Y	D	P	H	A	F	L	S	S	M	R	V	P	.	S	H	A	D	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		Y	Q	N	R	L	G	X	F	N	Y	D	X	I	I	G	K	L	K	N	S	L	S	P	G	N	E	Q	I	N	R	W	S	S	A	S	R	N	L	K	G	S	F	N	F	S	G	A	S	D	P	A	I	D	A	X	I	T	A	I	L	D	A	H	S	Q	V	D	F	I	A	A	V	R	A	L	D	R	I	L	I
Template Known Secondary structure									T			S										S	S			T	T											T		T	T		S		T	T																			S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
		482	.	.	.	.	.	.	.	490	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	V	Y	L	P	I	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	S	Y	Y	I	P	L	Y	H
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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