Job Description P33590 Confidence 100.00% Date Thu Jan 5 11:52:15 GMT 2012 Rank 5 Aligned Residues 483 % Identity 23% Template c3m8uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg) Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																											.	.																.
Query SS confidence																											.	.																.
Query Sequence		D	E	I	T	T	A	W	P	V	N	V	G	P	L	N	P	H	L	Y	T	P	N	Q	M	F	.	.	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	A	D	.	G	S	V	I	P	W	L	A	K	S	W	T	H	S	E	D	G	K	T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	P	F	D
Query Conservation																											.	.																.
Alig confidence																											.	.																.
Template Conservation
Template Sequence		K	T	F	I	N	C	V	S	R	S	P	T	G	F	S	P	A	L	V	M	D	G	I	S	Y	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	R	G	S	T	D	I	E	P	A	L	A	E	S	W	T	V	S	D	D	G	L	T	Y	T	F	N	L	R	K	G	V	K	F	H	S	N	K	E	F	T
Template Known Secondary structure									S	S			S		S		G	G	G										T								S					T	T	S	S					S	S								T	T	S									S	S						B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
								103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.												.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	E	A	A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	E	.	.	.	.	.	.	.	.	.	.	.	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	A	L	P	R	P	F	R	F	I	A
Query Conservation		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	R	D	F	N	A	D	D	V	V	F	S	F	Q	R	Q	L	D	P	N	H	P	Y	H	N	V	S	K	A	T	Y	P	Y	F	K	A	M	K	F	S	T	L	L	K	S	V	E	K	V	D	M	H	T	V	K	I	T	L	N	R	Q	D	A	T	F	L	A	S	L	G	M	D	F	I	S	I	Y	S	A
Template Known Secondary structure			S	S																	T	T	S	T	T	T	T	G	G	G									T	T													T	T							S	S			T	T					T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		166	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		P	S	Q	F	.	.	.	K	N	H	E	T	M	N	G	I	K	A	P	I	G	T	G	P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	G	E	K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G	N
Query Conservation						.	.	.
Alig confidence						.	.	.																																																																									.
Template Conservation																																																																																	.
Template Sequence		E	Y	A	D	K	M	L	A	A	G	K	P	E	T	I	D	T	T	P	I	G	T	G	P	F	L	F	A	G	Y	Q	V	D	Q	K	S	R	Y	L	A	H	K	E	Y	W	K	G	K	A	D	I	D	R	L	I	F	E	I	V	P	D	A	T	A	R	Y	A	K	L	Q	A	G	A	C	D	L	I	D	F	.
Template Known Secondary structure										T	T		T	T					S				S	S	S								T	T	T								T	T		T	T				S		S																				T	S		S			S	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	L	L	P	L	D	T	F	A	R	F	S	Q	N	P	A	Y	H	T	Q	L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	N	A	A	D	L	E	K	M	K	T	D	P	K	V	N	L	H	S	Q	S	G	L	N	I	A	Y	I	A	F	N	T	E	K	A	P	F	D	N	V	K	V	R	Q	A	L	N	Y	A	V	D	K	N	A	I	I	D	A	V	Y	R	G	A	G	V	A	A	K	N	P	L	P	P	T	I	W	G
Template Known Secondary structure		.	.	.										T	S		T	T									S									T	T	S	T	T	T	T	S										T										T	T	T	T	S					S	S	S	S		T	T	S	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	L	G	L	K	P	S	Q	Y	D	P	Q	K	A	K	A	L	L	E	K	A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence		Y	N	N	E	I	T	G	Y	E	Y	S	P	E	K	A	K	Q	L	L	K	E	A	G	F	E	N	G	.	.	.	.	.	.	.	.	F	E	T	D	I	W	V	Q	P	V	V	R	A	S	N	P	N	P	R	R	M	A	E	L	V	Q	S	D	W	E	K	V	G	V	K	S	K	L	V	S	Y	E	W	G	D
Template Known Secondary structure				T	T																		T	T		T	T		.	.	.	.	.	.	.	.									S	S		B	T	T	B	S															T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.									.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	A	R	Q	R	D	G	R	F	G	M	I	F	H	R	T	W	G	A	P	Y	D	P	H	A	F	L	S	S	M	R	V	P	S	H	A	D	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H	D
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		Y	I	K	R	T	K	A	G	E	L	T	A	G	T	Y	G	W	S	G	D	N	G	D	P	D	N	F	L	S	P	L	F	G	S	E	N	V	G	N	.	S	N	Y	A	R	F	K	N	P	E	L	D	A	L	L	H	K	A	V	G	L	S	D	K	A	E	R	A	K	I	Y	E	Q	A	Q	V	L	L	K	E
Template Known Secondary structure								T	T			S									S	S	S		T										G	G	G	B	T	T	.	T	B	T	T																T		S
Template Predicted Secondary structure																																									.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	V	Y	L	P	I	S	Y	I	S	M	M	V	V	S	K	P	E	L	G	N	I	P	Y	A	P	I	A	T	E	I	P	F	E	Q	I	K	P	V
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		Q	A	P	W	I	N	V	A	H	S	I	N	F	A	P	T	S	K	R	V	Q	D	Y	K	Q	S	P	F	G	Y	.	T	Y	L	Y	G	T	K	L	A
Template Known Secondary structure				S															T	T			S					T	T	S		.				T	T
Template Predicted Secondary structure																																.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530