Job Description P33590 Confidence 100.00% Date Thu Jan 5 11:52:15 GMT 2012 Rank 18 Aligned Residues 494 % Identity 18% Template c2d5wA_ PDB info PDB header:peptide binding protein Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide Resolution 1.30 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.														.	.	.	80	.	.	.
Predicted Secondary structure																						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	A	P	D	E	I	T	T	A	W	P	V	N	V	G	P	L	N	P	.	.	.	.	.	H	L	Y	T	P	N	Q	M	F	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	A	D	G	S	V	I	P	W	L	A	K	S	W	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	S	E	D	G	K
Query Conservation																						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	Q	D	N	S	L	V	I	G	A	S	Q	E	P	R	V	L	A	G	D	F	L	R	V	I	S	N	Q	A	I	K	S	E	I	E	Q	Y	L	F	A	P	F	I	G	F	N	A	D	S	Q	N	F	P	V	L	A	T	E	V	P	T	L	E	N	G	R	L	R	V	T	D	I	G	G	G	K	K	R	L
Template Known Secondary structure						T							S				S	S		S	S		T	T		S	S	B																S					T	T	S					S	S	B	S	S				T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	P	F	D	A	E	A	A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	E	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																.																										.	.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		E	M	D	I	T	I	R	P	D	A	K	W	S	D	G	R	P	I	T	T	E	D	V	A	F	Y	F	E	V	G	K	A	K	G	M	P	V	L	N	P	D	F	W	E	R	V	.	N	V	R	I	K	D	A	R	N	F	T	L	I	F	E	P	A	Y	Y	Y	D	T	Y	G	P	I	N	T	Y	A	P	K	H
Template Known Secondary structure							B		T	T		B		T	T	S		B															S	T	T				S									.						S	S	S							S	S			T	T	T	T		S		B
Template Predicted Secondary structure																																																.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
																							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	P	R	P	F	R	F	I	A	P	S	Q	F	K	N	H	E	T	M	N	G	I	K	A	P	I	G	T	G	P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	.	.	.	.	.	G	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Template Conservation
Template Sequence		I	M	G	P	E	W	E	R	V	K	A	A	A	R	G	L	D	P	D	K	D	A	E	K	L	N	E	L	Y	R	N	F	F	L	K	F	A	T	P	Q	A	L	N	R	G	A	M	V	Y	S	G	P	F	K	L	K	R	W	V	P	G	N	S	I	E	M	E	R	N	P	N	F	P	I	K	P	E	G	G	E
Template Known Secondary structure															T	T			T	T	T	T														T	T	T	S						T	T						S	S								T	T	T								T	T						T	T		G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																		.	.																									.	.	.	.	.	.
Query SS confidence																																																		.	.																									.	.	.	.	.	.
Query Sequence		K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G	N	E	G	L	L	P	L	D	T	F	A	R	F	S	Q	N	.	.	P	A	Y	H	T	Q	L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	.	.	.	.	.	.
Query Conservation																																																		.	.																									.	.	.	.	.	.
Alig confidence																																																		.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	Y	V	Q	K	V	V	Y	R	F	I	Q	N	T	N	S	L	L	V	A	V	I	G	G	S	I	D	A	T	S	S	V	S	L	T	F	D	Q	G	R	S	P	Q	L	V	R	R	A	P	G	R	F	D	I	W	F	V	P	G	A	I	W	E	H	I	D	I	N	K	F	E	N	C	Q	V	V	K	D	L
Template Known Secondary structure		G	G	S		S								S	S											T			S				S	S	S							T						T	T		T	T	T																				T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
			282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.
Predicted Secondary structure		.																																																																											.
Query SS confidence		.																																																																											.
Query Sequence		.	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y	A	N	L	G	L	K	P	S	Q	Y	D	P	Q	K	A	K	A	L	L	E	K	A	G	W	T	L	P	A	G	K	D	I	R	.	E	K	N	G
Query Conservation		.																																																																											.
Alig confidence		.																																																																											.
Template Conservation
Template Sequence		G	L	N	D	K	R	T	R	Q	A	I	L	H	A	L	N	R	E	G	L	V	K	A	F	F	D	G	L	Q	P	V	A	H	T	W	I	A	P	V	N	P	L	F	N	P	N	V	K	K	Y	E	F	D	L	K	K	A	E	A	L	L	A	E	M	G	W	R	K	G	P	D	G	I	L	Q	R	T	V	N	G
Template Known Secondary structure		T	T	T	S										T	S											T	T	S	S		B		S	S	S	S		T	T	S	T	T			T	T	S																	T	T					T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.							.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430
Predicted Secondary structure										.	.																																									.	.	.	.	.	.																	.
Query SS confidence										.	.																																									.	.	.	.	.	.																	.
Query Sequence		Q	P	L	R	I	E	L	S	.	.	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S	I	Y	A	R	Q	.	.	.	.	.	.	R	D	G	R	F	G	M	I	F	H	R	T	W	G	A	P	.	Y	D	P	H	A	F	L
Query Conservation										.	.																																									.	.	.	.	.	.																	.
Alig confidence										.	.																																									.	.	.	.	.	.																	.
Template Conservation
Template Sequence		R	T	V	R	F	E	I	E	Y	V	T	T	A	G	N	V	V	R	E	R	T	Q	Q	F	F	A	E	D	L	K	K	I	G	I	A	V	K	I	N	N	A	P	S	A	V	V	F	A	D	E	F	I	Q	R	A	S	E	C	K	W	T	G	M	F	E	F	A	W	V	S	N	L	Q	E	D	G	S	L	F	Q
Template Known Secondary structure													B	T	T																		T	T								B						T	B					T		G	G	G	T	S	S		S										S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		431	.	.	.	.	.	.	.	.	440									.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		S	S	M	R	V	P	S	H	A	D	.	.	.	.	.	.	.	.	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H	D	E	A	V	Y	L	P	I	S	Y	I	S	M	M	V	V	S	K	P	E	L
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	K	N	L	N	T	G	A	I	M	V	P	T	K	E	N	N	Y	Q	G	Q	N	I	G	G	W	R	N	D	E	F	D	R	L	T	S	Q	A	V	L	E	F	D	P	E	R	R	K	Q	L	F	W	R	A	Q	E	I	W	A	E	E	L	P	A	L	P	L	Y	F	R	A	N	P	Y	V	V	R	K	G	L
Template Known Secondary structure		S	B		T	T	T			B		S		S	G	G	G	T	T		S	S		T	T															T	T			S																				S															T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		503	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	I	P	Y	A	P	I	A	T	E	I	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	Y	V	A	S	A	Y	S	G	G	Y	G	Y
Template Known Secondary structure			S					S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.