Job Description P32719 Confidence 97.59% Date Thu Jan 5 11:50:42 GMT 2012 Rank 221 Aligned Residues 155 % Identity 14% Template d8ruca1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70
Predicted Secondary structure																					.																																.	.	.											.	.	.	.	.								.	.	.	.
Query SS confidence																					.																																.	.	.											.	.	.	.	.								.	.	.	.
Query Sequence		S	P	S	L	M	C	M	D	L	L	K	F	K	E	Q	I	E	F	I	.	D	S	H	A	D	Y	F	H	I	D	I	M	D	G	H	F	V	P	N	L	T	L	S	P	F	F	V	S	Q	V	K	.	.	.	K	L	A	T	K	P	L	D	C	H	.	.	.	.	.	L	M	V	T	R	P	Q	.	.	.	.
Query Conservation																					.																																.	.	.											.	.	.	.	.								.	.	.	.
Alig confidence																					.												.	.	.	.	.	.	.	.													.	.	.											.	.	.	.	.								.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence		Y	L	N	A	T	A	G	T	C	E	D	M	M	K	R	A	V	F	A	R	E	L	G	V	P	I	V	M	H	D	Y	.	.	.	.	.	.	.	.	L	T	G	G	F	T	A	N	T	T	L	S	H	Y	C	R	D	N	G	L	L	L	H	I	H	R	A	M	H	A	V	I	D	R	Q	K	N	H	G	M	H
Template Known Secondary structure								S	S															T		S							.	.	.	.	.	.	.	.																			T								T	T						S		S	S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.									270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
				71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	Y	I	A	Q	L	A	R	A	G	A	D	F	I	T	L	H	P	E	T	I	N	G	Q	A	F	R	L	I	D	E	I	R	R	H	D	M	K	V	G	L	I	L	N	P	E	T	P	V	E	A	M	K	Y	Y	I	H	K	A	D	K	I	T	V	M	T	V	D	P	G	F	A	G	Q	P	F	I	P
Query Conservation		.	.
Alig confidence		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Sequence		F	R	V	L	A	K	A	L	R	L	S	G	G	D	H	I	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	V	V	G	K	L	.	E
Template Known Secondary structure															S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S	S	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																																																						.	330	.	.	.	.	.		.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.																			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		E	M	L	D	K	L	A	E	L	K	A	W	R	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	E	Y	E	I	E	V	D	G	S	C	N	Q	A	T	Y	E	K	L	M	.	A	A	G	A	D	V	F	I	V	G	T	S	G	L	F	N	H	A	E	N	I	D	E	A
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		G	E	R	D	I	T	L	G	F	V	D	L	L	R	D	D	Y	T	E	K	D	R	S	R	G	I	Y	F	T	Q	S	W	V	S	T	P	G	V	L	P	V	A	S	G	G	I	H	V	W	H	M	P	A	L	T	E	I	F	G	D	D	S	V	L	Q	F	G	G	G	T	L	G	H	P	W	G	N	A	P	G
Template Known Secondary structure																	S					B	G	G	G	T	B		S					T	T										S	S			G	G	G										S	S	S					S					T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	I	M	T	A	Q	I	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	A	N	R	V	A	L	E	A	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions