|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
Query Sequence |   |
M | K | I | S | P | S | L | M | C | M | D | L | L | K | . |
. |
. |
. |
. |
. |
. |
F | K | E | Q | I | E | F | I | D | S | H | A | D | Y | F | H | I | D | I | M | D | G | H | F | V | P | N | L | T | L | S | P | F | F | V | S | Q | V | K | K | L | A | T | K | P | L | D | C | H | L | M | V | T | R | P | . |
. |
. |
. |
Query Conservation |   |
  |
|
|   |
|
|
|   |
|   |
|   |   |   | . | . | . | . | . | . | . |
|   |   |   |
|   |   |   |
|   |
|   |
|   |
|
|
|
|
|   |
|
|   |
|
|
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |
| . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | I | V | S | C | Q | A | L | P | G | E | P | L | Y | S | E | T | G | G | I | M | P | L | M | A | K | A | A | Q | E | A | G | A | V | G | I | R | A | N | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | R | D | I | K | E | I | Q | A | I | T | D | L | P | I | I | G | I | I | K | K | D | Y | P | P | Q | E | P |
Template Known Secondary structure |   |
|  |  |  |
|
|
|
| T | T | S | T | T |
|
| T | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  |  |
| B |
|
|
| T | T | S |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
Q | D | Y | I | A | Q | L | A | R | A | G | A | D | F | I | T | L | H | P | . |
. |
. |
. |
E | T | I | N | G | Q | A | F | R | L | I | D | E | I | R | R | H | D | M | K | V | G | L | I | L | N | P | E | T | P | V | E | A | M | K | Y | Y | I | H | K | A | D | K | I | T | V | M | T | V | D | P | G |
Query Conservation |   |
. | . | . | . | . |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|
|   | . | . | . | . |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |
|   |   |
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|   |
|
Template Sequence |   |
F | I | T | A | T | M | T | E | V | D | Q | L | A | A | L | N | I | A | V | I | A | M | D | C | T | K | R | D | R | H | D | G | L | D | I | A | S | F | I | R | Q | V | K | E | K | Y | P | N | Q | L | L | M | A | D | I | S | T | F | D | E | G | L | V | A | H | Q | A | G | I | D | F | V | G | T | T | L | S | G | Y | T |
Template Known Secondary structure |   |
| B | S |
| S |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  |
|
| S | S |
|
| T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |
| T | T | T | T | S | S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
  |
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | A | G | Q | P | F | I | P | E | M | L | D | K | L | A | E | L | K | A | W | R | E | R | E | G | L | E | Y | E | I | E | V | D | G | S | C | . |
N | Q | A | T | Y | E | K | L | M | A | A | G | A | D | V | F | I | V | G | T | S | G | L | F | N | H | A | E | N | I | D | E | A | W | R | I | M | T | A | Q | I | L |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
| . |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . |   |
|
|
|
|
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |
|
|
|   |
|   |
|
|
|
|
|   | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
P | Y | S | R | Q | E | A | G | P | D | V | A | L | I | E | A | L | C | K | A | . |
. |
. |
. |
. |
. |
G | I | A | V | I | A | E | G | K | I | H | S | P | E | E | A | K | K | I | N | D | L | G | V | A | G | I | V | V | G | G | A | I | T | . |
. |
. |
. |
. |
R | P | K | E | I | A | E | R | F | I | E | A | L | K |
Template Known Secondary structure |   |
T | T | S |
|
| S | S | S |
|
|  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | T |
|
|  |  |  |  | S |
|
|
| S |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |
|  |  |  |  | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . |
  |