|   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|  |  |  |  |  |  |
|
|
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|
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|
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
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|
|
|
|
|
|
|
|
|
| . |
|
|
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|
| . |
. |
. |
. |
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|
|
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|
| . |
. |
. |
|
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|
Query Sequence |   |
C | M | D | L | L | K | F | K | E | Q | I | E | F | I | . |
D | S | H | A | D | Y | F | H | I | D | I | M | D | G | H | F | V | P | N | L | T | L | S | . |
. |
. |
. |
P | F | F | V | S | Q | V | K | K | L | A | T | K | P | L | D | C | H | L | M | . |
. |
. |
V | T | R | P | Q | D | Y | I | A | Q | L | A | R | A | G |
Query Conservation |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   | . |
|   |
|   |
|   |
|
|
|
|
|   |
|
|   |
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|   |
|   |   |
| . | . | . | . |   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|
|
|
|
|   | . | . | . |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
Alig confidence |   |
|
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|
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|
|
|
|
|
|
| . |
|
|
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|
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|
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|
| . | . | . |
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|
| . | . | . | . |
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| . |
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|
| . | . | . |
|
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|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|   | . | . | . |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   | . |   |   |
|   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
Template Sequence |   |
R | I | D | K | E | K | L | K | I | H | A | E | N | L | I | R | K | G | I | D | K | L | F | V | N | . |
. |
. |
G | T | T | G | L | G | P | S | L | S | P | E | E | K | L | E | N | L | K | A | V | Y | D | V | T | N | . |
K | I | I | F | Q | V | G | G | L | N | L | D | D | A | I | R | L | A | K | L | S | K | D | F | D |
Template Known Secondary structure |   |
S | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | . | . | . | S | T | T | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | . |
|  |  |  |  |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  | G | G | G | S |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
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  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | |
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 100 | . | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
| . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
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|
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|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
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|
|
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|
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|
|
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|
|
Query Sequence |   |
A | D | F | I | T | L | H | P | E | T | . |
. |
. |
. |
. |
I | N | G | Q | A | F | R | L | I | D | E | I | . |
R | R | H | D | M | K | V | G | L | I | L | N | P | E | . |
. |
. |
. |
. |
T | P | V | E | A | M | K | Y | Y | I | H | K | A | D | K | I | T | V | M | T | V | D | P | G | F | A | G | Q | P | F | I | P | E |
Query Conservation |   |
|
|   |
|   |
|
|   |
|   | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   | . |
|   |   |
|   |
|   |   |
|   |
|   |
|   | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |
|
|   |
|
|
|   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|
|
|   |
|   |   |
Template Sequence |   |
I | V | G | I | A | S | Y | A | P | Y | Y | Y | P | R | M | S | E | K | H | L | V | K | Y | F | K | T | L | C | E | V | S | P | H | P | V | Y | L | Y | N | Y | P | T | A | T | G | K | D | I | D | A | K | V | A | K | E | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | C | F | T | G | V | K | D | T | I | E |
Template Known Secondary structure |   |
| S |  |  |  |  |  |
|
|
| S |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |  |
|  |  |  |  | S |
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
| S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | 150 | . | . | . | . | . | . | . | . | . |
  |
  |   |
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | L | D | K | L | A | E | L | K | A | W | R | E | R | E | G | L | E | Y | E | I | E | V | D | G | S | C | N | Q | A | T | Y | E | K | L | M | A | A | G | A | D | V | F | I | V | G | T | S | G | L | F | N | H | A | E | N | I | D | E | A | W | R | I | M | T | A | Q | I | L |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |
|   |   |
| . |   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
N | I | I | H | T | L | D | Y | K | R | L | . |
. |
. |
. |
. |
. |
N | P | N | M | L | V | Y | S | G | . |
S | D | M | L | I | A | T | V | A | S | T | G | L | D | G | N | V | A | A | G | S | N | Y | . |
. |
. |
. |
. |
L | P | E | V | T | V | T | I | K | K | L | A | M | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
| T | T | S |  |  |  |  |
| . |
| S | T | T |  |  |  |  |  |  | T | T |
|
|  |  |  |
| G | G | G | G | T | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . |
  |