|   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | K | E | Q | I | E | F | I | D | S | H | A | D | Y | F | H | I | D | I | M | D | G | H | F | V | P | N | L | T | L | S | P | F | F | V | S | Q | V | K | K | L | A | T | K | P | L | D | C | H | L | M | V | T | R | P | Q | D | Y | I | A | Q | L | A | R | A | . |
. |
G | A | D | F | I | T | L | H | P | E | T | I | N |
Query Conservation |   |
|   |   |   |
|   |   |   |
|   |
|   |
|   |
|
|
|
|
|   |
|
|   |
|
|
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |
| . | . |
|
|
|   |
|   |
|
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
| . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
| . |   |   |   |   |   |   |   |
|   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|   | . | . |   |   |   |
| . |   |
|
|
|
|   |   |   |   |
|   |   |
|
|
|
| . |
|
|   |   |   |
Template Sequence |   |
Q | E | W | A | R | R | Q | A | E | K | G | A | H | Y | L | D | V | N | . |
T | G | P | T | A | D | D | P | V | R | V | M | E | W | L | V | K | T | I | Q | E | V | V | D | L | P | C | C | L | D | S | T | . |
. |
N | P | D | A | . |
I | E | A | G | L | K | V | H | R | G | H | A | M | I | N | S | . |
T | S | A | D | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  | . |
|
| S |
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| S | . | . |
|  |  |  | . |  |  |  |  |  |  |  |
|
| S |
|
|  |  |  |  | . |  |
| S |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . | . |
|  |  |  | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
. | 80 | . | . | |
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
. | 100 | . | . | . |
  |
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
|
|
|
|
. | . | |
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |  |  | . | . |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | A | F | R | L | I | D | E | I | R | R | H | D | M | K | V | G | L | I | L | N | . |
. |
. |
. |
. |
P | E | T | P | V | E | A | M | K | Y | Y | I | H | K | A | D | . |
. |
. |
. |
. |
K | I | . |
. |
T | V | M | T | V | D | P | G | F | A | G | Q | P | F | I | P | E | M | L | D | K | L | A | E | L | K | A | W |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|   |
|   | . | . | . | . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . |   |
| . | . |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |
|
|   |
Template Sequence |   |
W | K | M | D | I | F | F | P | M | A | K | K | Y | E | A | A | I | I | G | L | T | M | N | E | K | G | V | P | K | D | A | N | D | R | S | Q | L | A | M | E | L | V | A | N | A | D | A | H | G | I | P | M | T | E | L | Y | I | D | P | L | I | L | P | V | N | V | A | Q | E | H | A | V | E | V | L | E | T | I | R | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  | S |
| B | T | T | B |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |  |  |
|
|
|
|
| T | T | T | S | T |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . |
  |
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | E | R | E | G | L | E | Y | E | I | E | V | D | G | S | C | N | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | T | Y | E | K | L | M | A | A | G | A | D | V | F | I | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   |
|
|
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|
|
Template Sequence |   |
I | K | L | M | A | N | P | A | P | R | T | V | L | G | L | S | N | V | S | Q | K | C | P | D | R | P | L | I | N | R | T | Y | L | V | M | A | M | T | A | G | L | D | A | A | I | M |
Template Known Secondary structure |   |
 | T | T | S | S | S | S |
|
|  |  |  |  |  | G | G | G | G | G | T | T |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
184 | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . |
  |