Job Description P32719 Confidence 97.84% Date Thu Jan 5 11:50:42 GMT 2012 Rank 188 Aligned Residues 175 % Identity 10% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																	.											.
Query SS confidence																	.											.
Query Sequence		M	C	M	D	L	L	K	F	K	E	Q	I	E	F	I	.	D	S	H	A	D	Y	F	H	I	D	.	I	M	D	G	H	F	V	P	N	L	T	L	S	P	F	F	V	S	Q	V	K	K	L	A	T	K	P	L	D	C	H	L	M	V	T	R	P	Q	D	Y	I	A	Q	L	A	R	A	G	A	D	F	I	T
Query Conservation																	.											.
Alig confidence																	.											.																													.	.	.
Template Conservation																																																									.	.	.
Template Sequence		Q	P	I	E	V	A	D	K	I	R	L	V	D	D	L	S	A	A	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	G	V	T	Y	.	.	.	A	A	L	A	P	N	L	K	G	F	E	A	A	L	E	S	G	V	K	E	V	A
Template Known Secondary structure		S																	T	T		S								S		T	T	T		G	G	G	T	T								S				T	T	S			.	.	.						S										T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.																.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		L	H	P	E	T	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	A	F	R	L	I	D	E	I	R	R	H	D	M	K	V	G	L	I	L	N	P	E	.	.	.	.	.	.	.	.	T	P	V	E	A	M	K	Y	Y	I	H	K	A	D	K	I	.	.	.	.	T	V	M	T	V	D
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		V	F	A	A	A	S	E	A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	G	Y	I	S	C	V	L	G	C	P	Y	D	G	D	V	D	P	R	Q	V	A	W	V	A	R	E	L	Q	Q	M	G	C	Y	E	V	S	L	G	D	T
Template Known Secondary structure						S										S	S																			T	T										T	T		B	T	T	T	B																	T	T		S							S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		P	G	F	A	G	Q	P	F	I	P	E	M	L	D	K	L	A	E	L	K	A	W	R	E	R	E	G	L	E	Y	E	I	E	V	.	.	.	.	D	G	S	C	N	Q	A	T	Y	E	K	L	M	A	A	G	A	D	V	F
Query Conservation																																				.	.	.	.
Alig confidence							.	.	.	.	.	.	.																							.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		I	G	V	G	T	.	.	.	.	.	.	.	A	G	A	T	R	R	L	I	E	A	V	A	S	E	V	P	R	E	R	L	A	G	H	F	H	D	T	Y	G	Q	A	L	A	N	I	Y	A	S	L	L	E	G	I	A	V	F
Template Known Secondary structure		S	S				.	.	.	.	.	.	.												T	T	T	S		G	G	G						B		T	T	S												T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions