Job Description P32719 Confidence 99.95% Date Thu Jan 5 11:50:42 GMT 2012 Rank 22 Aligned Residues 204 % Identity 14% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																					.	50	.	.	.	.		.	.	.
Predicted Secondary structure																						.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query SS confidence																						.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query Sequence		I	S	P	S	L	M	C	M	D	L	L	K	F	K	E	Q	I	E	F	I	.	.	.	.	D	S	H	A	D	Y	F	H	I	D	I	M	D	G	H	F	V	P	N	L	T	L	S	P	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	Q	V	K	K	.	L	A	T
Query Conservation																						.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Alig confidence												.										.	.	.	.												.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation												.																									.	.	.
Template Sequence		L	V	S	Y	L	M	V	G	Y	P	.	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	.	.	.	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V	L	E	L	S	E	T	L	R	K	E	F	P	D
Template Known Secondary structure								T	T	S	S	.															T	T		S							.	.	.			S			T	T	S														T	T																		T	T
Template Predicted Secondary structure												.																									.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		K	P	L	D	C	H	L	M	V	T	R	P	.	.	.	.	.	.	Q	D	Y	I	A	Q	L	A	R	A	G	A	D	F	I	T	L	H	P	E	T	I	N	G	Q	A	F	R	L	I	D	E	I	R	R	H	D	M	K	V	G	L	I	L	N	P	E	T	P	V	E	A	M	K	Y	Y	I	H	K	A	D	K
Query Conservation														.	.	.	.	.	.
Alig confidence					.									.	.	.	.	.	.																		.
Template Conservation					.																																.
Template Sequence		I	P	F	.	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	.	P	D	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T	R	K	R	I	K	L	I	C	E	A	A	D	E
Template Known Secondary structure		S			.																								T	T							.	T	T																T	T									T	T														S	S
Template Predicted Secondary structure					.																																.
Template SS confidence
		95	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	V	M	T	V	D	P	G	F	A	G	Q	P	F	I	P	E	M	L	D	K	L	A	E	L	K	A	W	R	E	R	E	G	L	E	Y	E	I	E	V	D	G	S	C	N	Q	A	T	Y	E	K	L	M	A	A	G	A	D	V	F	I	V	G	T	S	G	L	F	N	H	A	E	N	I	D	E	A	W	R
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation														.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		M	T	Y	F	V	S	V	T	G	Y	E	R	.	.	.	.	.	.	.	.	.	.	I	K	K	K	V	E	E	Y	R	E	L	C	D	K	P	V	V	V	G	F	G	V	S	K	K	E	H	A	R	E	I	G	S	.	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	K	I	E	D	L	G
Template Known Secondary structure							S	S						.	.	.	.	.	.	.	.	.	.														S						S	S			S									T	.	T	S	S														T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		212	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	T	A	Q	I	L	A	A	K	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	V	K	E	L	K	E	G	L	R	E
Template Known Secondary structure										T	T	B
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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