Job Description P32719 Confidence 71.73% Date Thu Jan 5 11:50:42 GMT 2012 Rank 461 Aligned Residues 172 % Identity 15% Template c1w8gA_ PDB info PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs Resolution 2.0 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	E	Q	I	E	F	I	D	S	H	A	D	Y	F	H	I	D	I	M	D	G	H	F	V	P	N	L	T	L	S	P	F	F	V	S	Q	V	K	K	L	A	T	K	P	L	D	C	H	L	M	V	T	R	P	Q	D	Y	I	A	Q	L	A	R	A	G	A	D	F	I	T	L	H	P	E	T	I	N	G	Q
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																																																.	.	.
Template Conservation																			.	.	.	.	.	.	.	.																																																.	.	.
Template Sequence		A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	E	.	.	.	.	.	.	.	.	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F	I	G	P	L	Q	S	N	K	S	R	L	V	A	E	H	F	D	W	C	H	T	I	.	.	.	D	R	L	R	I
Template Known Secondary structure											T	T							.	.	.	.	.	.	.	.	S	S														T	T			S							S				G	G	G									S						.	.	.		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																																																.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.										.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		A	F	R	L	I	D	E	I	R	R	H	D	M	K	V	G	L	I	L	N	P	E	T	.	.	.	.	.	.	.	.	.	P	V	E	A	M	K	Y	Y	I	H	K	A	.	.	.	.	.	.	D	K	I	T	V	M	T	V	D	P	G	F	A	G	Q	P	F	I	P	E	M	L	D	K	L	A	E	L	K	A
Query Conservation																									.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	R	L	N	D	Q	R	P	A	E	L	P	P	L	N	V	L	I	Q	I	N	I	S	D	E	N	S	K	S	G	I	Q	L	A	E	L	D	E	L	A	A	A	V	A	E	L	P	R	L	R	L	R	G	L	M	A	I	P	A	P	E	S	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A
Template Known Secondary structure									S		T	T	S												S		T	T				S	B		G	G	G										T		T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	E	R	E	G	L	E	Y	E	I	E	V	D	G	S	C	N	Q	A	T	Y	E	K	L	M	A	A	G	A	D	V	F	I	V	G	T	S	G	L
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M	S	D	.	.	D	M	E	A	A	I	A	A	G	S	T	M	V	R	I	G	T	A	I	F
Template Known Secondary structure							S	T	T									G	G	.	.	G								T		S					S
Template Predicted Secondary structure																				.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions