Job Description P52067 Confidence 100.00% Date Thu Jan 5 12:05:08 GMT 2012 Rank 2 Aligned Residues 369 % Identity 12% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	G	A	I	S	L	S	H	L	L	N	D	M	I	Q	S	L	I	L	A	I	Y	P	L	L	Q	S	E	F	S	L	T	F	M	Q	I	G	M	I	T	L	T	F	Q	L	A	S	S	L	L	Q	P	V	V	G	Y	W	T	D	K	Y	P	M	P	W	S	L	P	I	G	M	C	F	T	L	S	G	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L
Template Known Secondary structure																													T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		L	L	A	L	A	G	S	F	G	A	V	L	L	A	A	A	L	V	G	T	G	S	S	V	F	H	P	E	S	.	S	R	V	A	R	M	A	S	G	G	R	H	G	L	A	Q	S	I	F	Q	V	G	G	N	F	G	S	S	L	G	P	L	L	A	A	V	I	I	A	P	Y	G	K	G	N	V	A	W	F	V
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L
Template Known Secondary structure																																								T	S	S			S																							S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	L	L	A	I	V	V	L	A	Q	I	S	R	W	Y	S	A	Q	H	R	M	N	K	G	K	P	K	A	T	I	I	N	P	L	P	R	N	K	V	V	L	A	V	S	I	L	L	I	L	I	F	S	K	Y	F	Y	M	A	S	I	S	S	Y	Y	T	F	Y	L	M	Q	K	F	G	L	S	I	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L
Template Known Secondary structure															S	S				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	H	L	F	A	F	L	F	A	V	A	A	G	T	V	I	G	G	P	V	G	D	K	I	G	R	K	Y	V	I	W	G	S	I	L	G	V	A	P	F	T	L	I	L	P	Y	A	S	L	H	W	T	G	V	L	T	V	I	I	G	F	I	L	A	S	A	F	S	A	I	L	V	Y	A	Q	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F
Template Known Secondary structure				T														T	T	T	T																T	S	S	S	S	S																											T	S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	R	I	G	M	V	S	G	L	F	F	G	F	A	F	G	M	G	G	L	G	A	A	V	L	G	L	I	A	D	H	T	S	I	E	L	V	Y	K	I	C	A	F	L	P	L	L	G	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L
Template Known Secondary structure																								S	T	T		T																							T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions