Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9J0
Confidence97.71%DateThu Jan 5 11:10:26 GMT 2012
Rank20Aligned Residues75
% Identity28%Templated3bzka4
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90.........100.........110...
Predicted Secondary structure 











































Query SS confidence 















































































Query Sequence  RRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLG
Query Conservation       



 


  
 
 
 






  
 


   

                   
   
  
  




 

   
Alig confidence 

















..
























............






















Template Conservation    
  
  
 
 
  
  .. 
  
 
     
 
    


   ............        

  
   

 

  
Template Sequence  KDLKPGMVLEGVVTNVTN. . FGAFVDIGVHQDGLVHISALSEKFV. . . . . . . . . . . . KDPYEVVKAGDIVKVKVMEVDIP
Template Known Secondary structure  GG

TT
T..T
SSSS
GGGG
SS

............S


TT
TT
Template Predicted Secondary structure 





..










............








Template SS confidence 















































































   650.........660....... ..670.........680.........690.. .......700.........710.....
 
   114.....120..
Predicted Secondary structure 



Query SS confidence 








Query Sequence  TKGARLTTD
Query Conservation   


 

  
Alig confidence 








Template Conservation     
 



Template Sequence  RNRVGLSMR
Template Known Secondary structure  TTS
Template Predicted Secondary structure 

Template SS confidence 








   716...720....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions