Job Description P0A9J0 Confidence 100.00% Date Thu Jan 5 11:10:26 GMT 2012 Rank 1 Aligned Residues 467 % Identity 33% Template c2c4rL_ PDB info PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e Resolution 3.6 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	A	E	L	L	V	N	V	T	P	S	E	T	R	V	A	Y	I	D	G	G	I	L	Q	E	I	H	I	E	R	E	A	R	R	G	I	V	G	N	I	Y	K	G	R	V	S	R	V	L	P	G	M	Q	A	A	F	V	D	I	G	L	D	K	A	A	F	L	H	A	S	D	I	M	P	H	T	E	C	V
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		M	K	R	M	L	I	N	A	T	Q	Q	E	E	L	R	V	A	L	V	D	G	Q	R	L	Y	D	L	D	I	E	S	P	G	H	E	Q	K	K	A	N	I	Y	K	G	K	I	T	R	I	E	P	S	L	E	A	A	F	V	D	Y	G	A	E	R	H	G	F	L	P	L	K	E	I	A	R	E	Y	F	.	.
Template Known Secondary structure										S		T	T									T	T										S	S	S				T	T					B	B		S			B	T	T	T	T					B	S	S	S	S	S						T	T	T			S	T	T		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		A	G	E	E	Q	K	Q	F	T	V	R	D	I	S	E	L	V	R	Q	G	Q	D	L	M	V	Q	V	V	K	D	P	L	G	T	K	G	A	R	L	T	T	D	I	T	L	P	S	R	Y	L	V	F	M	P	G	A	S	H	V	.	G	V	S	Q	R	I	E	S	E	S	E	R	E	R	L	K	K	V	V	A
Query Conservation																																																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																		.																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																																			.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	P	N	I	K	D	V	L	R	E	G	Q	E	V	I	V	Q	I	D	K	E	E	R	G	N	K	G	A	A	L	T	T	F	I	S	L	A	G	S	Y	L	V	L	M	P	N	N	P	R	A	G	G	I	S	R	R	I	E	L	K	E	A	L	A	S	L	E	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.									S	S			B					S	S				S	S							S	S						S	S					T	T		S	S						T	T									T	S		.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																			.	.	.	.
Template SS confidence
												79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	C	D	E	Q	G	G	F	I	I	R	T	A	A	E	G	V	G	E	A	E	L	A	S	D	A	A	Y	L	K	R	V	W	T	K	V	M	E	R	K	K	R	P	Q	T	R	Y	Q	L	Y	G	E	L	A	L	A	Q	R	V	L	R	D	F	A	D	A	E	L	D	R	I	R	V	D	S	R	L	T	Y
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	P	E	G	M	G	L	I	V	R	T	A	G	V	G	K	S	A	E	A	L	Q	W	D	L	S	F	R	L	K	H	W	E	A	I	K	K	A	A	E	S	R	P	A	P	F	L	I	H	Q	E	S	N	V	I	V	R	A	F	R	D	Y	L	R	Q	D	I	G	E	I	L	I	D	N	P	K	V	L
Template Known Secondary structure		.	.			S	S							T	T	T	T	S	S																									S	S			S	S																T			T	T	B						S
Template Predicted Secondary structure		.	.
Template SS confidence
				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		E	A	L	L	E	F	T	S	E	Y	I	.	P	E	M	T	S	K	L	E	H	Y	T	G	R	Q	P	I	F	D	L	F	D	V	E	N	E	I	Q	R	A	L	E	R	K	V	E	L	K	S	G	G	Y	L	I	I	D	Q	T	E	A	M	T	T	V	D	I	N	T	G	A	F	V	G	H	R	N	L	D	D
Query Conservation													.
Alig confidence													.																																																												.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		E	L	A	R	Q	H	I	A	A	L	G	R	P	D	F	S	S	K	I	K	L	Y	T	G	E	I	P	L	F	S	H	Y	Q	I	E	S	Q	I	E	S	A	F	Q	R	E	V	R	L	P	S	G	G	S	I	V	I	D	S	T	E	A	L	T	A	I	D	I	N	S	A	R	.	.	.	.	G	D	I	E	E
Template Known Secondary structure															T	T	T	T	T							S	S						T	T								T	T	S	S	S		B		T	T	S									S	S											.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	F	N	T	N	I	E	A	T	Q	A	I	A	R	Q	L	R	L	R	N	L	G	G	I	I	I	I	D	F	I	D	M	N	N	E	D	H	R	R	R	V	L	H	S	L	E	Q	A	L	S	K	D	R	V	K	T	S	V	N	G	F	S	A	L	G	L	V	E	M	T	R	K	R	T	R	E	S	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	F	N	T	N	L	E	A	A	D	E	I	A	R	Q	L	R	L	R	D	L	G	G	L	I	V	I	D	F	I	D	M	T	P	V	R	H	Q	R	A	V	E	N	R	L	R	E	A	V	R	Q	D	R	A	R	I	Q	I	S	H	I	S	R	F	G	L	L	E	M	S	R	Q	R	L	S	P	S	L	G
Template Known Secondary structure																					T	T														S															S	S	S		S	S									T	T	S										S			G	G
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		H	V	L	C	N	E	C	P	T	C	H	G	R	G	T	V	K	T	V	E	T	V	C	Y	E	I	M	R	E	I	V	R	V	H	H	A	Y	D	S	D	R	F	L	V	Y	A	S	P	A	V	A	E	A	L	K	G	E	E	S	H	S	L	A	E	V	E	I	F	V	.	G	K	Q	V	K	V	Q	I	E	P
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		E	S	S	H	H	V	C	P	R	C	S	G	T	G	T	V	R	D	N	E	S	L	S	L	S	I	L	R	L	I	E	E	E	A	L	K	E	N	T	Q	E	V	H	A	I	V	P	V	P	I	A	S	Y	L	L	N	E	K	R	S	A	V	N	A	I	E	T	R	Q	D	G	V	R	C	V	I	V	P	N	D
Template Known Secondary structure		G	G	T					S	S	S	S	S	S	S																				T	T	S	S	S																		T	T	T											T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	N	Q	E	Q	F	D	V	V	M	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	M	E	T	P	H	Y	H	V	L	R	V
Template Known Secondary structure		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.