Job Description P0A9J0 Confidence 97.08% Date Thu Jan 5 11:10:26 GMT 2012 Rank 33 Aligned Residues 91 % Identity 18% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	I	V	G	N	I	Y	K	G	R	V	S	R	V	L	P	G	M	Q	A	A	F	V	D	I	G	L	D	K	A	A	F	L	H	A	S	D	I	M	P	H	T	E	C	V	A	G	E	E	Q	K	Q	F	T	V	R	D	I	S	E	L	V	R	Q	G	Q	D	L	M	V	Q	V	V	K	D	P	L	G	T
Query Conservation
Alig confidence																				.	.										.
Template Conservation																				.	.										.
Template Sequence		R	P	F	K	G	E	V	V	D	A	V	V	T	Q	V	N	K	V	.	.	G	L	F	T	E	I	G	P	M	.	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V	G	T	R	V	D	K
Template Known Secondary structure					T	T												T	T	.	.							T	T		.						G	G	G	S		S	S					S	S	S	S	S						T	T	S	S					T	T														T
Template Predicted Secondary structure																				.	.										.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	A	R	L	T	T	D	I	T	L	P	S	R	Y	L
Query Conservation
Alig confidence									.	.
Template Conservation									.	.
Template Sequence		N	D	I	F	A	I	G	.	.	S	L	M	D	D	Y	L
Template Known Secondary structure		T							.	.				S	T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		155	.	.	.	.	160	.			.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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