Job Description P0A9J0 Confidence 98.34% Date Thu Jan 5 11:10:26 GMT 2012 Rank 3 Aligned Residues 174 % Identity 20% Template c1yz6A_ PDB info PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi Resolution 3.37 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		G	I	V	G	N	I	Y	K	G	R	V	S	R	V	L	P	G	M	Q	A	A	F	V	D	I	G	.	.	L	D	K	A	A	F	L	H	A	S	D	I	M	P	H	T	E	C	V	A	G	E	E	Q	K	Q	F	T	V	R	D	I	S	E	L	V	R	Q	G	Q	D	L	M	V	Q	V	V	K	D	P	L	G
Query Conservation																												.	.
Alig confidence																			.	.								.	.																	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																			.	.																										.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		P	E	E	G	E	F	V	V	A	T	V	K	R	I	H	N	Y	.	.	G	A	F	L	E	L	D	E	Y	P	G	K	E	A	F	M	H	I	S	E	V	A	S	T	W	.	.	.	.	.	.	.	.	.	.	.	.	V	R	N	I	R	D	Y	L	K	E	G	Q	K	V	V	A	K	V	I	R	V	D	.	.
Template Known Secondary structure				T	T												T	T	.	.							T	T	S	T	T							G	G	G	T	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.		S		G	G	G	T			T	T												.	.
Template Predicted Secondary structure																			.	.																										.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50													.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180	.	.
Predicted Secondary structure																																	.																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	G	A	R	L	T	T	D	I	T	L	P	S	R	Y	L	V	F	M	P	G	A	S	H	V	G	V	S	Q	R	.	I	E	S	E	S	E	R	E	R	L	K	K	V	V	A	E	Y	C	D	E	Q	G	G	F	I	I	R	T	A	A	E	G	V	G	.	.	.	.	.	.	.	.	.	.	E	A	E	L
Query Conservation																																	.																																			.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																						.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	K	G	H	I	D	L	S	L	R	R	V	T	Q	Q	Q	R	K	A	K	L	Q	E	F	K	R	A	Q	K	A	E	N	.	.	.	L	L	K	L	A	A	E	K	L	G	K	D	F	E	T	A	W	R	E	V	W	V	P	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T						S	S	S																						.	.	.										T			S					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
																						73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		A	S	D	A	A	Y	L	K	R	V	W	T	K	V	M	E	R	K	K	R	P	Q	T	R	Y	Q	L	Y	G	E	L	A	L	A	Q	R	V	L	R	D	F	A	D	A	E	L	D	.	.	.	.	.	.	R	I	R	V	D	S	R	L	T	Y	E	A	L	L	E	F	T	S	E
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	E	W	G	E	V	Y	A	A	F	E	D	A	A	K	D	G	I	D	V	L	K	G	H	V	P	D	E	W	L	P	V	L	K	E	I	I	D	N	Y	V	E	V	P	T	V	T	I	D	A	E	F	E	I	T	V	P	K	P	N	G	V	E	I	I	K	E	A	L	I	R
Template Known Secondary structure					T	S														G	G	G	G	B	T	T	B		T	T	T												S																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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