Job Description P0A9J0 Confidence 96.59% Date Thu Jan 5 11:10:26 GMT 2012 Rank 38 Aligned Residues 97 % Identity 19% Template c1go3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex Resolution 1.75 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	G	I	L	Q	E	I	H	I	E	R	E	A	R	R	G	I	V	G	N	I	Y	K	G	R	V	S	R	V	L	P	G	M	Q	A	A	F	V	D	I	G	L	D	K	A	A	F	L	H	A	S	D	I	M	P	H	T	E	C	V	A	G	E	E	Q	K	Q	F	T	V	R	D	I	S	E	L	V	R	Q
Query Conservation
Alig confidence																																		.	.									.																							.	.	.
Template Conservation																																		.	.									.																							.	.	.
Template Sequence		D	G	S	A	Y	H	P	V	V	F	E	T	L	V	Y	I	P	E	M	Y	E	L	I	E	G	E	V	V	D	V	V	E	.	.	F	G	S	F	V	R	L	G	.	P	L	D	G	L	I	H	V	S	Q	I	M	D	D	Y	V	S	Y	D	P	K	A	.	.	.	I	I	G	K	E	T	G	K	V	L	E	I
Template Known Secondary structure				S																T	T												T	.	.	T							S	.	S	S						G	G	G	S		S	S									.	.	.				T	T	T						T
Template Predicted Secondary structure																																		.	.									.																							.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	D	L	M	V	Q	V	V	K	D	P	L	G	T	K	G	A	R	L	T	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	Y	V	R	A	R	I	V	A	I	S	L	K	A	S	K	I	A	L	T	M	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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