Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6J3
Confidence14.27%DateThu Jan 5 11:03:16 GMT 2012
Rank5Aligned Residues38
% Identity13%Templatec2ww9B_
PDB info PDB header:ribosomeChain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome
Resolution8.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   191........200.........210... ...... 220........
Predicted Secondary structure 



.....
Query SS confidence 






















. .





. . .








Query Sequence  HKVPFKEMRTALRTRKITNMQFG. . ALTSLF. . . TMIPLLNLF
Query Conservation        
        
     

..    

... 


 


 
Alig confidence 






















..





...








Template Conservation 


 


 


  
  
  


 


 


 











Template Sequence  AKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVI
Template Known Secondary structure  S





Template Predicted Secondary structure 




Template SS confidence 










































   37..40.........50.........60.........70.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions