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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank22Aligned Residues566
% Identity19%Templated2jioa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.2

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80. ........90.........100.........110.........120
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Query Sequence  TDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDK. . . YPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQ
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Template Sequence  PEKWVKGVCRY. CGTGCGVLVGVKDGKAVAIQGDPNNHNAGLLCLKGSLLIPVLNSKERVTQPLVRR. . . . . . . . . . . . .
Template Known Secondary structure 
S
SS.
TT

TT
TTSTTTT


T

S
S

S

S.............
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   5....10..... ....20.........30.........40.........50.........60.........70
 
   121........130.........140.........150.........160.........170.........180... ......190........
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Query Sequence  RGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNS. . VGTGGDYSTGAAQVI
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Template Sequence  HKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCL. . . TEESYVANKIFKGGFGTNNVDGNPRLCMASAVGG
Template Known Secondary structure  STT





GGG
TTS
...TT



GGGGTT
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   71........80.........90.........100.........110... ......120.........130.........140.......
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  LPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEY
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Template Sequence  YVTSFGK. . . . DEPMGTYADIDQATCFFIIGSNTSEAHPVL. . . . . . . . . . FRRIARRKQVEPGVKIIVADPRRTNT. . .
Template Known Secondary structure  SS....
S
SS
GGGGGT
SS

S..........
TT

SS

GG...
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   148.150.... .....160.........170.........180.... .....190.........200.........210
 
   279280.........290.........300.........310.........320 .........330.........340.........
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Query Sequence  LGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYC. . . . . . . . . VGFEQFLPYLLGEKDGQPKDAAWAEKLTG
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Template Sequence  . SRIADMHVAFRPGTDLAFMHSMAWVIINEELDNPRFWQRYVNFMDAEGKPSDFEGYKAFL. . . . . . ENYRPEKVAEICR
Template Known Secondary structure  .GGG
S


TT
TT
S

TTS

......GGG
T
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   211........220.........230.........240.........250.........260.........270 .........280...
 
   350.........360....... ..370.........380.........390.........400.........410........ .420.......
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Query Sequence  IDAETIRGLARQMAANRT. QIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPG. RKGVILSGF
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Template Sequence  VPVEQIYGAARAFAESAATMSLWCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLL
Template Known Secondary structure  S
SSS
SSTTT

SBTTB


SSSTTTTT
STT
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   284.....290.........300.........310.........320.........330.........340.........350.........360...
 
   428.430.........440.........450.........460.........470.........480.........490.........500..... .
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Query Sequence  SGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLE. T
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Template Sequence  PAGRAIPNAKHRAEMEKLWGL. . . . PEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESF
Template Known Secondary structure  TTTTT
T
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TT
S
SS



TSS
S

SSSTT
TT
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   364.....370.........380.... .....390.........400.........410.........420.........430.........
 
   507..510..... ....520.........530.........540.........550.........560.........570.........580.....
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Query Sequence  VIAIDNQWT. STCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLD
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Template Sequence  IVCIEAFPDAVTLEYADLVLPPAFWCERD. . . GVYGCGERRYSLTEKAVDPPGQCRPTVNTLVEFARRAGVDPQLVNFRN
Template Known Secondary structure 
S
TT
GGGGT
S
B

GGGS
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TTS


S


TT
B
TT

GGGG

SS
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   440.........450.........460........ .470.........480.........490.........500.........510......
 
   586...590.........600.........610.........620... ......630....... ..640.........650....
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Query Sequence  EMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEF. . . . DHPQMFVRHQAFRE. . . . . . . DPDLEPLGTPSGLIEIY
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Template Sequence  AEDVWNEWRMVSKGTTY. . DFWGMTRERLRKESGLIWPCPSEDHPGTSLRYVRGQDPCVPADHPDRFFFYGKPDGRAVIW
Template Known Secondary structure  TTSTT..

TT

SS
S


STT



SSTTBTTT
TTS
TT
SSSB

TTSTTS
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   517..520.........530... ......540.........550.........560.........570.........580.........590....
 
   655....
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Query Sequence  SKTIA
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Template Sequence  MRPAK
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   595....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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