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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank19Aligned Residues607
% Identity27%Templated1vlfm2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70....... ..80.........90.........100........
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Query Sequence  EGILTGSHWGAIRATVKDGRFVAAKPF. . . . . . . . . . . . . . . . . . . . . . ELDKYPSKMIAGLPDHVHNAARIRYPMVRVD
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Template Sequence  VRLTNSSTGGPVFVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPYPMKRK.
Template Known Secondary structure 

TT

TT

B

TTTS




TT


SB



TTT
TTB

S
T.
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   5....10.........20.........30.........40.........50.........60.........70.........80...
 
   109110.........120..... ....130.........140.........150.........160. ........
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Query Sequence  WLRKRHLSDTSQRGDNR. . . . . . . . . . . . . . . . . . FVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQ. STGMFHNA
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Template Sequence  . . . . . . . . . . SFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYR
Template Known Secondary structure  ..........T

TTS


GGGTTTT
GGGG

T
GGG

S


S
TTTST
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   84.....90.........100.........110.........120.........130.........140.........150...
 
   170.........180.........190.........200.........210..... ....220.........230.........240......
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Query Sequence  SGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSW. . . PLVLQNSKTIVLWGSDLLKNQQANWWCPDHD
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Template Sequence  HSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWSSDPETNSGIYAGFES. .
Template Known Secondary structure  TT




TTTT

GGGTT



TT
SS


SSS
TTTT..
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   154.....160.........170.........180.........190.........200.........210.........220.........230.
 
   247..250.........260.........270.........280.. .......290.........300.........310.........320.....
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Query Sequence  VYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGRE. HVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQ
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Template Sequence  . . . . . NIRRQWLKDLGVDFVFIDPHMNHT. . . . ARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEE
Template Known Secondary structure  .....TT

SS

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S


TT
T
S
S
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   232.......240.........250..... ....260.........270.........280.........290.........300..
 
   326...330.........340.........350.........360.........370... ......380.........390.........400
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Query Sequence  FLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGW. . . . . CVQRMQHGEQWAWMIVVLAAMLGQIGL
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Template Sequence  WADYVLGKTDGTPKTCEWAEEESGVPACEIRALARQWAKKNTYLAAGGLGGWGGACRASHGIEWARGMIALATMQG. MGK
Template Known Secondary structure  TTTTTS






S
TTTTS

GGGSSTTTT.TTS
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   303......310.........320.........330.........340.........350.........360.........370........ .380.
 
   401........410.........420........ .430.........440.........450.........460...
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Query Sequence  PGGGFGFGWHYNGAGTPGRKGVILSGFS. . . . . . . . . . . . . . . . . GSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGK
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Template Sequence  PGSNMWSTTQGVPLDYEFYFPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSAGQHIPRLKIPECIMGGKF
Template Known Secondary structure  TT


SSS




TTS



GGG
TTS

TTTSGGGTT

SSS





SSSSTTS
GGGS
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   382.......390.........400.........410.........420.........430.........440.........450.........460.
 
   464.....470... ......480.........490.........500. ........510.........520......
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Query Sequence  VINWNGKSVK. . . . . . . . . . . . . . . LPPLKMCIFAGTNPFHRHQQINRIIEGL. . RKLETVIAIDNQWTSTCRFADIVLP
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Template Sequence  QWSGKGFAGGDISHQLHQYEYPAPGYSKIKMFWKYGGPHLGTMTATNRYAKMYTHDSLEFVVSQSIWFEGEVPFADIILP
Template Known Secondary structure 

SS

SSTTGGG
S
TT




S

SSSTTT
TT

SBS
TTGGG
S
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   462.......470.........480.........490.........500.........510.........520.........530.........540.
 
   527..530...... ...540.........550.........560.........570.........580.........590.....
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Query Sequence  ATTQFERNDL. . . . . . . . . . . DQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQ
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Template Sequence  ACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLNIEEMFSEGKDELAWCEQYFN
Template Known Secondary structure  B

GGGS
TT

BTTBTTGGGGSSS



S

STT
B
TT
TT

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   542.......550.........560.........570.........580.........590.........600.........610.........620.
 
   596...600.........610.........620.........630. ........640.........650........
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Query Sequence  EGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVR. . . . . . . . . . . . . . . . . HQAFREDPDLEPLGTPSGLIEIYSKTI
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Template Sequence  ATDMPKYM. . . . . . TWDEFFKKGYFVVPDNPNRKKTVALRWFAEGREKDTPDWGPRLNNQVCRKGLQTTTGKVEFIATSL
Template Known Secondary structure  TSSGGGT
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TTS



TTTTS


SS
S
S
GGGSBTTBS
SSTTSSSB
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   622....... 630.........640.........650.........660.........670.........680.........690.....
 
   659660.... .....670.........680.........690..
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Query Sequence  ADMNYD. . . . . DCQGHPMWFEKIERSHGGPGSQKYPLHL
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Template Sequence  KNFEEQGYIDEHRPSMHTYVPAWESQ. . . . . . KHSPLAV
Template Known Secondary structure  TT


TTS
SB





TTST......TT
GGG
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   696...700.........710.........720. .......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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