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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank21Aligned Residues632
% Identity16%Templated1kqfa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60...... ...70.........80... ......90.........100.........110..
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Query Sequence  TDAVISKEGILTGSHWGAIRATV. . . . . . . KDGRFVAAKPFELDKYP. . . . SKMIAGLPDHVHNAARIRYPMVRVDWLRK
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Template Sequence  LRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRA. . . . .
Template Known Secondary structure  TTS
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S

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   41........50.........60.........70.........80.........90.........100.........110.....
 
   113......120.........130.........140.........150. ........160.........170.........180
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Query Sequence  RHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGP. . . . . . . . . . . . SALLTASGWQSTGMFHNASGMLAKAIALH
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Template Sequence  . . . . . . . . PGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGAS. . . NETGMLTQKFARSL
Template Known Secondary structure  ........TT
SS




TTS
B
S

TTS
...T
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   116...120.........130.........140.........150.........160.........170 .........180....
 
   181........190.........200.........210.........220.........230.........240.........250.........260
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Query Sequence  GNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAA
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Template Sequence  GMLAVDNQARVHGPTVASLAPTFGR. . . . GAMTNHWVDIKNANVVMVMGGNAAEAHPVGF. . . . . . . . . . . . RWAMEAKN
Template Known Secondary structure  TB


GGG

S
....
S
SS
TGGGGG
SS

STTTT............
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   185....190.........200......... 210.........220.........230.........240 ........
 
   261 ........270.........280.........290.........300.........310.........320..
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Query Sequence  G. EIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVG. . . . . . . . . . . . . . . . .
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Template Sequence  NNDATLIVVDPRFTRT. . . . ASVADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSG
Template Known Secondary structure  S


SS

....T
S


TT
TT
S
BSTTBBB
TT

TTTT
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   250.........260..... ....270.........280.........290.........300.........310.........320.....
 
   323......330.........340.........350.........360.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAAN. .
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Template Sequence  YDAEKRQYDKSSWNYQLDENGYAKRDETLTHPRCVWNLLKEHV. . . . . . SRYTPDVVENICGTPKADFLKVCEVLASTSA
Template Known Secondary structure  TTTT

TTSSB
B
TTSSB
B
TTS
STTB......TT




GGGS
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   326...330.........340.........350.........360........ .370.........380.........390.........
 
   366...370.........380.........390.........400.........410.........420.........430.........440..
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Query Sequence  . . . RTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDY
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Template Sequence  PDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQ
Template Known Secondary structure  TT

SSSTTT
TT
TT
S


BTTTT
STTGGG

BTT

S
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   400.........410.........420.........430.........440.........450.........460.........470.........
 
   443......450........ .460.........470.........480.......
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Query Sequence  KGYSSTIPIARFIDAI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LEPGKVINWNGKSVKLPPLKMCIFAGTNP
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Template Sequence  SYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNP
Template Known Secondary structure  S


SSSS


GGGGGGG

GGGGGGGGGS

BSS


TT


S

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   480.........490.........500.........510.........520.........530.........540.........550.........
 
   488.490.........500.........510.........520. ........530.........540.........550
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Query Sequence  FHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFA. . . . . . . . . . . . . . . . . DIVLPATTQFERNDLDQYGNHSNRGIIAM
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Template Sequence  VASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEED. . . GSIANSGRWLQWH
Template Known Secondary structure  SSSTT
SSB

TTTTTTS

GGGG


GGG


B

GGGS
...
TT
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   560.........570.........580.........590.........600.........610.........620... ......630......
 
   551........560.........570..... ....580.........590.........600.........610...
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Query Sequence  KQVVPPQFEARNDFDIFRELCRRFN. . . . . . . . . . . . . . . . . REEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDD
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Template Sequence  WKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGY. . . . . . . . . . . . ALED
Template Known Secondary structure 


S

STT
B


SSS



SSTTS


............SS
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   637..640.........650.........660.........670.........680.........690.........700 ....
 
   614.....620.........630.........640.........650.........660.........670.........680.........690...
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Query Sequence  FWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQ
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Template Sequence  LYDANGVLIAKKGQLLSSFAHLRDD. . . . . GTTASS. CWIYTGSWTEQGNQ. . . . . . MANRDNSDPSGLGNTLGWAW. . A
Template Known Secondary structure 
TTS

TT
B
S
GGG

SS.....SS
S.
GGGTTSTTG......GG
B



TTSSS

TTBS..
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   705....710.........720......... 730..... ....740......... 750.........760......... 770
 
   694.....700.........710.........720.........730.........740........
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Query Sequence  SVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARG
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Template Conservation   
        
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Template Sequence  WPLNRRVLYNRASADI. . NGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTG
Template Known Secondary structure  TTTT
SSTTGGGGB
T..TS
BSSTTS


SSSSS

SS
S

TTSS

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   771........780...... ...790.........800.........810.........820...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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