Return to main results Retrieve Phyre Job Id

Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank23Aligned Residues494
% Identity19%Templated1h0ha2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60...... ...70.........80... ......90.........100.........110
Predicted Secondary structure 
















..









....











Query SS confidence 





























. .
















. . . .


























Query Sequence  ATAAQAATDAVISKEGILTGSHWGAIRATV. . KDGRFVAAKPFELDKYP. . . . SKMIAGLPDHVHNAARIRYPMVRVDWL
Query Conservation                     
   
   
 
.. 

 



         ....           
 



  



    
Alig confidence 





























..
















....























...
Template Conservation            
   
 
  
  


  
 
  


 

 


    
 
 
 

 

       
 
 

  

 
 ...
Template Sequence  ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRA. . .
Template Known Secondary structure 




TTTTS
SSBTT


TTT


TT
TTTTT


TS
TTS
SS

...
Template Predicted Secondary structure 





































...
Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.......
 
   111........120.........130.........140.........150... ......160.........170........
Predicted Secondary structure 


















............




Query SS confidence 










































. . . . . . . . . . . .
























Query Sequence  RKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSA. . . . . . . . . . . . LLTASGWQSTGMFHNASGMLAKAIA
Query Conservation          
 

 
    







 

 

  
    
  
............
    
                
  
Alig confidence  ........
..































............









...











Template Conservation  ........ ..
 
 
  







 

 

  
    
 
             
   
     ... 
  
   

  
Template Sequence  . . . . . . . . P. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMD. . . NEECWIYQAWLR
Template Known Secondary structure  ........T..T
SS



TTS

S

TTS
...
Template Predicted Secondary structure  ........
..























...
Template SS confidence 















































































   78 .80.........90.........100.........110.........120.........130.. .......140....
 
   179180.........190.........200.........210.........220.........230.........240.........250........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  LHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKV
Query Conservation    
                      
             
   

 

  
 

  
                      
Alig confidence 


























....






























............





Template Conservation   


        
            
 ....        
  


 

  
 

    
   ............  
  
Template Sequence  SLGLFYIEHQARIHSATVAALAESYGR. . . . GAMTNHWIDLKNSDVILMMGSNPAENHPISF. . . . . . . . . . . . KWVMRA
Template Known Secondary structure  TTB


GGG

S
....
S
SS
TGGGGG
SS

STT............
Template Predicted Secondary structure 














....













............
Template SS confidence 















































































   145....150.........160.........170. ........180.........190.........200.. ......
 
   259260.........270.........280.........290.........300.........310.........320..
Predicted Secondary structure 
























................
Query SS confidence 































































. . . . . . . . . . . . . . . .
Query Sequence  AAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVG. . . . . . . . . . . . . . . .
Query Conservation     
 







 
 

   

 

 








 

 


   

   
 
  

   
 
................
Alig confidence 
















....










































................
Template Conservation     









 
 
....
  

 

 





 

 


   

     
 


   
    

        
   
Template Sequence  KDKGATLIHVDPRYTRT. . . . STKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFA
Template Known Secondary structure  TT

SS

TT....GGG
S


TT
TT
S
BGGGBBB
TT

TTT
Template Predicted Secondary structure 










....





























Template SS confidence 















































































   210.........220...... ...230.........240.........250.........260.........270.........280.....
 
   323......330.........340.........350.........360.....
Predicted Secondary structure  ....................................













.
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .










































.
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAAN.
Query Conservation  ....................................       
    
    


 

 



    
  

   
  .
Alig confidence  ....................................







......




























.
Template Conservation 
 
                       
       
    

   ......  



 

 




 
 
  

   
   
Template Sequence  GYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHY. . . . . . ERYDLDKISAICGTPKELILKVYDAYCATG
Template Known Secondary structure  TTTTT
GGGG
B
B
TTS
B
B
TTS
STTB......TT




GGG
Template Predicted Secondary structure 

































......







Template SS confidence 















































































   286...290.........300.........310.........320......... 330.........340.........350.........
 
   366...370.........380.........390.........400.........410.........420.........430.........440.
Predicted Secondary structure  ....

















































Query SS confidence  . . . .











































































Query Sequence  . . . . RTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSD
Query Conservation  ....   
  
 
      
     
   
 

 
 

  


                                     
Alig confidence  ....











































































Template Conservation     
   
  
 
      
    

   
  
 



 



     
  



  
 
     


            
Template Sequence  KPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTY
Template Known Secondary structure  STT





SSTT
SSSTT
S

SBTTTT
BTTTTT

BTT

S
Template Predicted Secondary structure 





















































Template SS confidence 















































































   360.........370.........380.........390.........400.........410.........420.........430.........
 
   442.......450... ......460.........470.........480.......
Predicted Secondary structure 




..................................













Query SS confidence 











. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

































Query Sequence  YKGYSSTIPIAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNP
Query Conservation          
   ..................................        
              

       

Alig confidence 











..................................

































Template Conservation                                                
                    
 

     
 

Template Sequence  EEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNP
Template Known Secondary structure 





TT


GGGG
TTS
S

B
TT


STT


S

Template Predicted Secondary structure 























































Template SS confidence 















































































   440.........450.........460.........470.........480.........490.........500.........510.........
 
   488.490.........500.........510.........520 .........530.........540.........550....
Predicted Secondary structure 










.............




























Query SS confidence 
































. . . . . . . . . . . . .

































Query Sequence  FHRHQQINRIIEGLRKLETVIAIDNQWTSTCRF. . . . . . . . . . . . . ADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVV
Query Conservation      
      


 





  
   



  .............





 
   
  
           
      
Alig confidence 
































.............













...
















Template Conservation    
 
      


 


 


 
   



               








  
  ...
  

  
 

   


Template Sequence  ACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKE. . . GSISNSGRWMQWRYVGP
Template Known Secondary structure  SSSTT
SSS

TTTTGGGSTT

GGG


B

GGG

...
TT


SS
Template Predicted Secondary structure 





































...








Template SS confidence 















































































   520.........530.........540.........550.........560.........570......... 580.........590......
 
   555....560.........570.....
Predicted Secondary structure 









Query SS confidence 




















Query Sequence  PPQFEARNDFDIFRELCRRFN
Query Conservation   
 



 
  
   

 


Alig confidence 




















Template Conservation   
 



 
  
   





Template Sequence  EPRKNAIPDGDLIVELAKRVQ
Template Known Secondary structure 


TT
B
Template Predicted Secondary structure 







Template SS confidence 




















   597..600.........610.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions