Return to main results Retrieve Phyre Job Id

Job DescriptionP33225
Confidence23.86%DateThu Jan 5 11:51:24 GMT 2012
Rank172Aligned Residues29
% Identity17%Templatec3t72o_
PDB info PDB header:transcription/dnaChain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
Resolution4.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   332.......340.........350.........360
Predicted Secondary structure 











Query SS confidence 




























Query Sequence  GEKDGQPKDAAWAEKLTGIDAETIRGLAR
Query Conservation     
    


 

 



    
  

 
Alig confidence 




























Template Conservation 

      

 


  










  
Template Sequence  GIDMNTDYTLEEVGKQFDVTRERIRQIEA
Template Known Secondary structure  SSSS
S


SS
Template Predicted Secondary structure 










Template SS confidence 




























   564.....570.........580.........590..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions