Job Description P33225 Confidence 72.72% Date Thu Jan 5 11:51:24 GMT 2012 Rank 103 Aligned Residues 53 % Identity 21% Template c2yujA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		687	.	.			690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		K	Y	P	.	.	L	H	L	Q	S	V	H	P	D	F	R	L	H	S	Q	L	C	E	S	E	T	L	R	Q	Q	Y	T	V	A	G	K	E	P	V	F	I	N	P	Q	D	A	S	A	R	G	I	R	N	G	D	V	V	R	V	F	N	A	R
Query Conservation					.	.
Alig confidence					.	.																				.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.
Template Sequence		T	Y	P	M	L	F	K	L	T	N	K	N	S	D	R	M	T	H	C	G	V	L	E	F	.	.	.	.	.	.	.	.	V	A	D	E	G	I	C	Y	L	P	H	W	M	M	Q	N	L	L	L	E	E	G	G	L	V	Q	V	E	S	V	N
Template Known Secondary structure			S	S								T	T	T	T											.	.	.	.	.	.	.	.			B	T	T	B					S							T			T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.									.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions