Job Description P33225 Confidence 100.00% Date Thu Jan 5 11:51:24 GMT 2012 Rank 13 Aligned Residues 701 % Identity 21% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		A	Q	A	A	T	D	A	V	I	S	K	E	G	I	L	T	G	S	H	W	G	A	I	R	A	T	V	K	D	G	R	F	V	A	A	K	P	F	E	L	D	K	.	.	.	Y	P	S	K	M	I	A	G	L	P	D	H	V	H	N	A	A	R	I	R	Y	P	M	V	R	V	D	W	L	R	K	R	H	L	S
Query Conservation																																												.	.	.
Alig confidence											.																																	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation											.																																																														.	.	.	.	.	.	.	.	.
Template Sequence		A	D	N	R	P	E	K	W	V	.	K	G	V	C	R	Y	C	G	T	G	C	G	V	L	V	G	V	K	D	G	K	A	V	A	I	Q	G	N	P	N	N	H	N	A	G	L	L	C	L	K	G	S	L	L	I	P	V	L	N	S	K	E	R	V	T	Q	P	L	V	R	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S		S				.					S	S		T	T										T	T									T	T	S	T	T	T	T								T						T		S		S			S					S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		D	T	S	Q	R	G	D	N	R	F	V	R	V	S	W	D	E	A	L	D	M	F	Y	E	E	L	E	R	V	Q	K	T	H	G	P	S	A	L	L	T	A	S	G	W	Q	S	T	G	M	F	H	N	A	S	G	M	L	A	K	A	I	A	L	H	G	N	S	.	V	G	T	G	G	D	Y	S	T	G	A	A
Query Conservation																																																																					.
Alig confidence		.	.	.	.																																																				.	.											.
Template Conservation		.	.	.	.																																																				.	.
Template Sequence		.	.	.	.	H	K	G	G	K	L	E	P	V	S	W	D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	.	.	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A
Template Known Secondary structure		.	.	.	.	S	T	T																												G	G	G							T	T	S										.	.					T	T	T								G	G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.																																																				.	.
Template SS confidence
						71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	I	L	P	R	V	V	G	S	M	E	V	Y	E	Q	Q	T	S	W	P	L	V	L	Q	N	S	K	T	I	V	L	W	G	S	D	L	L	K	N	Q	Q	A	N	W	W	C	P	D	H	D	V	Y	E	Y	Y	A	Q	L	K	A	K	V	A	A	G	E	I	E	V	I	S	I	D	P	V	V	T	S	T
Query Conservation
Alig confidence												.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	G	Y	V	T	S	F	G	K	.	.	.	.	D	E	P	M	G	T	Y	A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	.	.	.	.	.	.	.	.	.	.	F	R	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	D	P	R	R	T	N	T
Template Known Secondary structure										S	S	.	.	.	.		S		S	S		G	G	G	G	G	T		S						S							S				.	.	.	.	.	.	.	.	.	.												T	T								S	B			G	G
Template Predicted Secondary structure												.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320										.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.
Query Sequence		H	E	Y	L	G	R	E	H	V	K	H	I	A	V	N	P	Q	T	D	V	P	L	Q	L	A	L	A	H	T	L	Y	S	E	N	L	Y	D	K	N	F	L	A	N	Y	C	.	.	.	.	.	.	.	.	.	V	G	F	E	Q	F	L	P	Y	L	L	G	E	K	D	G	Q	P	K	D	A	A	W	A	E	K
Query Conservation																																															.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																										.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation		.	.	.	.																																																													.	.	.	.	.	.
Template Sequence		.	.	.	.	S	R	I	A	D	M	H	V	A	F	R	P	G	T	D	L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	L	D	N	P	R	F	W	Q	R	Y	V	N	F	M	D	A	E	G	K	P	S	D	F	E	G	Y	K	A	F	L	.	.	.	.	.	.	E	N	Y	R	P	E	K	V	A	E
Template Known Secondary structure		.	.	.	.	G	G	G		S							T	T																T	T		S														T	T	S		B											.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure		.	.	.	.																																																													.	.	.	.	.	.
Template SS confidence
						211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270							.	.	.	.	.	.	.	.	.	280
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		L	T	G	I	D	A	E	T	I	R	G	L	A	R	Q	M	A	A	N	R	T	.	Q	I	I	A	G	W	C	V	Q	R	M	Q	H	G	E	Q	W	A	W	M	I	V	V	L	A	A	M	L	G	Q	I	G	L	P	G	G	G	F	G	F	G	W	H	Y	N	G	A	G	T	P	G	R	K	G	V	I	L	S
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		I	C	R	V	P	V	E	Q	I	Y	G	A	A	R	A	F	A	E	S	A	A	T	M	S	L	W	C	M	G	I	N	Q	R	V	Q	G	V	F	A	N	N	L	I	H	N	L	H	L	I	T	G	Q	I	C	R	P	G	A	T	S	F	S	L	T	G	Q	P	N	A	C	G	G	V	R	D	G	G	A	L	S
Template Known Secondary structure				T	S															S	S	S											S	S	T	T																T			S	B	T	T	B								S	T	T					T	T	T	T	T		S	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	S	G	S	T	S	I	P	P	V	H	D	N	S	D	Y	K	G	Y	S	S	T	I	P	I	A	R	F	I	D	A	I	L	E	P	G	K	V	I	N	W	N	G	K	S	V	K	L	P	P	L	K	M	C	I	F	A	G	T	N	P	F	H	R	H	Q	Q	I	N	R	I	I	E	G	L	R	K	L	E
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		H	L	L	P	A	G	R	A	I	P	N	A	K	H	R	A	E	M	E	K	L	W	G	L	P	E	G	R	I	A	.	.	.	P	E	P	G	Y	H	T	V	A	L	F	E	A	L	G	R	G	D	V	K	C	M	I	I	C	E	T	N	P	A	H	T	L	P	N	L	N	K	V	H	K	A	M	S	H	P	E
Template Known Secondary structure		T			T	T	T			T	T												T	T			T	T		S		.	.	.	S	S															T	S								S							S	S	S								T	T		T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
			506	.	.	.	510	.	.	.	.		.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure		.										.
Query SS confidence		.										.
Query Sequence		.	T	V	I	A	I	D	N	Q	W	.	T	S	T	C	R	F	A	D	I	V	L	P	A	T	T	Q	F	E	R	N	D	L	D	Q	Y	G	N	H	S	N	R	G	I	I	A	M	K	Q	V	V	P	P	Q	F	E	A	R	N	D	F	D	I	F	R	E	L	C	R	R	F	N	R	E	E	A	F	T	E	G
Query Conservation		.										.
Alig confidence		.										.																					.	.	.
Template Conservation																																	.	.	.
Template Sequence		S	F	I	V	C	I	E	A	F	P	D	A	V	T	L	E	Y	A	D	L	V	L	P	P	A	F	W	C	E	R	D	.	.	.	G	V	Y	G	C	G	E	R	R	Y	S	L	T	E	K	A	V	D	P	P	G	Q	C	R	P	T	V	N	T	L	V	E	F	A	R	R	A	G	V	D	P	Q	L	V	N	F
Template Known Secondary structure									S		T	T		G	G	G	G	S		S					B			G	G	G	S		.	.	.						T	T	S									S			S	T	T		B													T	T			T	T	T	T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	M	G	W	L	K	R	I	W	Q	E	G	V	Q	Q	G	K	G	R	G	V	H	L	P	A	F	D	D	F	W	N	N	K	E	Y	V	E	F	D	H	P	Q	M	F	V	R	H	Q	A	F	R	E	D	P	D	L	E	P	L	G	T	P	S	G	L	I	E	I	Y	S	K	T	I	A	D	M	N	Y
Query Conservation
Alig confidence																		.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	A	E	D	V	W	N	E	W	R	M	V	S	K	G	.	.	T	T	Y	D	F	W	G	M	T	R	E	R	L	R	K	E	S	G	L	I	W	P	C	P	.	.	.	.	.	.	.	.	.	.	S	E	D	H	P	G	T	S	L	R	Y	V	R	G	Q	D	P	C	V	P	A	D	H	P	D	R	F	F
Template Known Secondary structure		S	S													T	T	.	.	S	T	T			T	T									S	S				S				.	.	.	.	.	.	.	.	.	.	S	T	T					S	S	T	T	B	T	T	T	S	T	T	S		T	T		S	S	S	B
Template Predicted Secondary structure																		.	.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530			.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.											.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
		664	.	.	.	.				.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.			.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																						.	.
Query SS confidence							.	.	.																																						.	.
Query Sequence		D	D	C	Q	G	.	.	.	H	P	M	W	F	E	K	I	E	R	S	H	G	G	P	G	S	Q	K	Y	P	L	H	L	Q	S	V	H	P	D	F	R	L	H	S	Q	L	.	.	C	E	S	E	T	L	R	Q	Q	Y	T	V	A	G	K	E	P	V	F	I	N	P	Q	D	A	S	A	R	G	I	R	N	G
Query Conservation							.	.	.																																						.	.
Alig confidence							.	.	.																	.																					.	.									.	.	.
Template Conservation																										.																															.	.	.
Template Sequence		F	Y	G	K	P	D	G	R	A	V	I	W	M	R	P	A	K	G	A	A	E	E	P	D	.	A	E	Y	P	L	Y	L	T	S	M	R	V	I	D	H	W	H	T	A	T	M	T	G	K	V	P	E	L	Q	K	.	.	.	A	N	P	I	A	F	V	E	I	N	E	E	D	A	A	R	T	G	I	K	H	G
Template Known Secondary structure			T	T	S	T	T	S													S	S				.	S	S	S										S	S			T	T		T	T	G	G	G		G	G	G	G	S	.	.	.	S		S	S														T			T	T
Template Predicted Secondary structure																										.																															.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.		.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.				.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
		739	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	V	R	V	F	N	A	R	G	Q	V	L	A	G	A	V	V	S	D	R	Y	A	P	G	V	A	R	I	H	E	G	A	W	Y	D	P	D	K	G	G	E	P	G	A	L	C	K	Y	G	N	P	N	V	L	T	I	D	I	G	T	S	Q	L	A	Q	A	T	S	A	H	T	T	L	V	E	I	E	K
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		D	S	V	I	V	E	T	R	R	D	A	M	E	L	P	A	R	V	S	D	V	C	R	P	G	L	I	A	V	P	F	F	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	L	V	N	K	L	F	L	D	A	.	T	D	P	V	S	R	E	P	E	Y	K	I	C	A	A	R	V	R	K
Template Known Secondary structure									S	S											S	S	B		T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		G	G	G	T	S				.	B		T	T	T			B		T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.															.	.	.	.	.	.	.	700	.	.	.		.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.