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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank7Aligned Residues713
% Identity19%Templatec2ivfA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50...... ...60.........70.........80... ......90.........100.........110.
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Query Sequence  DAVISKEGILTG. . SHWGAIRATVKDGRFVAAKPFELDKYP. . . . . . . . . . . SKMIAGLPDHVHNAARIRYPMVRVDWLR
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Template Sequence  DKVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKRV. . . .
Template Known Secondary structure  S


S

SS




TT





SSTTS



S


TTGGGTTSTTB

S

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   75....80.........90.........100.........110.........120.........130.........140.........150
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  KRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYS
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Template Sequence  . . . . . . . GKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAG. . FRMTYLMDGV. . . . . SPD
Template Known Secondary structure  .......SSTTS



GGGG



STT
..T
B.....
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   151........160.........170.........180.........190.........200... ......210... ...
 
   192.......200.........210.........220.........230.........240.........250.........260.........270.
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Query Sequence  TGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPV
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Template Sequence  INVDIGDTYMGAFHTFGKMHMGYSADNLLDAELIFMTCSNWSYTYPSSY. . . . . . . . . . . . HFLSEARYKGAEVVVIAPD
Template Known Secondary structure  T


S



B

GGGGGG
SS


TTT............T

SS
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   217..220.........230.........240.........250.........260..... ....270.........280....
 
   272.......280.........290.........300.........310.........320
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Query Sequence  VTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FNPT. . . . TPAADLHVPVRVGSDAAFWLGLSQVMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFD
Template Known Secondary structure 

TT....GGG
S


TT
TT
S
BSTTSTTT
SB
BS

TT
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   285... .290.........300.........310.........320.........330.........340.........350.........360
 
   321........330.........340.........350.........360.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQ
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Template Sequence  EKAGSVRKASRGTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREHL. . . . . . KDYTPEKASAKCGVPVSLIRELGRK
Template Known Secondary structure  TTTT
SS



SS



S

TTS
G......GGGS


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   361........370.........380.........390.........400......... 410.........420.........430....
 
   362.......370.........380.........390.........400.........410.........420.........430.........440.
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Query Sequence  MAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSD
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Template Sequence  VAKKRTCSYIGFSSAKSYHGDLMERSLFLAMALSGNWGKPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFN
Template Known Secondary structure  S

TTTTTBTTTT
SSSTT

S
B





SS
GGGTTT
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   435....440.........450.........460.........470.........480.........490.........500.........510....
 
   442..... ..450.........460.........470.
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Query Sequence  YKGYSS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TIPIARFIDAILEPGKVINWNGKS
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Template Conservation                                                                        
         
Template Sequence  KRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMWLYYHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRP
Template Known Secondary structure 
TT

TT
SSTT
GGGS
TTSSS
TTSS
TTTS
S
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   515....520.........530.........540.........550.........560.........570.........580.........590....
 
   472.......480.........490....... ..500.........510.........520.........530.........540.........
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Query Sequence  VKLPPLKMCIFAGTNPFHRHQQINRI. . IEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIA
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Template Sequence  APDKTPQVYMLLSQNPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMYADIVLPCAWYYEKHEM. TTPCSGNPFFTF
Template Known Secondary structure 
TTS


S

STTTTGGG
SSB

TTGGG
SB

TT.



SSS
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   595....600.........610.........620.........630.........640.........650.........660. ........670...
 
   550.........560.........570..... ....580.........590.........600.....
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Query Sequence  MKQVVPPQFEARNDFDIFRELCRRFN. . . . . . . . . . . . . . . . . . . . . . . . REEAFTEGLDEMGWLKRIWQEGVQQGKGRG
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Template Sequence  VDRSVAPPGECREEWDAIALILKKVGERAAARGLTEFNDHNGRKRRYDELYKKFTMDGHLLTNEDCLKEMVDINRAVGVF
Template Known Secondary structure 
S

STT
B
TT


TTS
GGGTTTTT

STTSS
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   674.....680.........690.........700.........710.........720.........730.........740.........750...
 
   606...610.........620.........630.........640... ......650.........660.........670..
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Query Sequence  VHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEP. . . . . . . . . . . . . LGTPSGLIEIYSKTIADMNYDDCQGHPMW
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Template Sequence  AKDYTYEKFKKEGQTRFLSMGTGVSRYAHANEVDVTKPIYPMRWHFDDKKVFPTHTRRAQFYLD. . HDWYLEAGESLPTH
Template Known Secondary structure 
TT




S
TTST
S


TTS


S
S



SSTTSSB




..
T
SS


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   754.....760.........770.........780.........790.........800.........810....... ..820.........830.
 
   673......680.........690.........700.........710.........720.........730.........740.........750..
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Query Sequence  FEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLA
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Template Sequence  KDTPMVG. . . . . . GDHPFKITGGHPRVSIHSTHLTNSHLSRL. . HRGQPVVHMNSKDAAELGIKDGDMAKLFNDFADCEI
Template Known Secondary structure 




TT......SS
S



SSSSTTTTTT
TT..S
SS
TT

TT

SS
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   832...... .840.........850.........860....... ..870.........880.........890.........900...
 
   753......760.........770.........780.........790....... ..800...... ...810......
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Query Sequence  GAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDI. GTSQLAQAT. . . . . . . . . . . . . . . SAHTTLVEIE
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Template Sequence  MVRTAPNVQPKQCIVYFWDAHQ. . . . . . . . . YKGWKPYDILLIGMPKPLHLAGGYEQFRYYFMNGSPAPVTDRGVRVSIK
Template Known Secondary structure  TTS
TT




GGG.........SGGG

GGGG





GGGG

SBTTB

BTTB
S

S


BT
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   904.....910.........920..... ....930.........940.........950.........960.........970....
 
   817
Predicted Secondary structure 
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Query Sequence  K
Query Conservation 
Alig confidence 
Template Conservation 
Template Sequence  K
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   975
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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