Job Description P33225 Confidence 48.28% Date Thu Jan 5 11:51:24 GMT 2012 Rank 126 Aligned Residues 190 % Identity 14% Template c2amlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution Resolution 1.50 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		E	A	L	D	M	F	Y	E	E	L	E	R	V	Q	K	T	.	.	.	.	.	.	H	G	P	S	A	L	L	T	A	S	G	W	Q	S	T	G	M	F	H	N	A	S	G	M	L	A	K	A	I	A	L	H	G	N	S	V	G	T	G	G	D	Y	S	T	G	A	A	Q	V	I	L	P	R	V	V	G	S	M
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.											.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.																																					.	.	.	.	.	.	.	.
Template Sequence		E	X	C	R	V	I	L	A	D	F	Q	T	N	A	E	K	L	E	S	L	V	K	N	G	A	K	E	W	L	I	L	A	.	.	.	.	T	G	S	S	L	N	A	A	Q	S	A	K	Y	Y	I	E	N	L	A	D	V	R	I	T	I	E	E	P	F	N	H	L	Y	Y	E	K	.	.	.	.	.	.	.	.
Template Known Secondary structure																							T	T			S							.	.	.	.																			S	S																	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		E	V	Y	E	Q	Q	T	S	W	P	L	V	L	Q	N	S	K	T	I	V	L	W	G	S	D	L	L	K	N	Q	Q	A	N	W	W	C	P	D	H	D	V	Y	E	Y	Y	A	Q	L	K	A	K	V	.	A	A	G	E	I	E	V	I	S	I	D	P	V	V	T	S	T	H	E	Y	L	G	R	E	H	V	K
Query Conservation																																																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																		.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	L	S	S	H	L	D	L	V	I	G	I	S	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	S	T	S	T	I	S	A	L	E	R	V	K	K	E	A	S	V	P	V	V	A	L	T	S	D	V	T	S	E	.	.	.	I	A	E	F	A	D	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.			T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B																							S		T	T	S	G	.	.	.	G	G	G	G		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template SS confidence
													82	.	.	.	.	.	.	.	90	.	.	.	.	.															.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.
		286	.	.	.	290	.	.														.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	A	V	N	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	V	P	L	Q	L	A	L	A	H	T	L	Y	S	E	N	L	Y	D	K	N	F	L	A	N	Y	C	V	G	F	E	Q	F	L	P	Y	L	L	G	E	K	D	G	Q	P	K	D	A	A	W	A	E	K	L	T	G	I	D	A
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Sequence		T	L	D	I	G	S	G	K	E	R	V	G	Y	V	T	K	G	F	T	A	T	V	L	T	L	X	L	T	G	L	H	F	A	Y	K	T	V	Q	I	D	E	T	R	F	N	N	E	I	S	A	F	S	R	A	I	D	A	I	.	.	.	.	.	.	.	.	.	.	P	A	T	I	A	E	T	.	.	.	.	E
Template Known Secondary structure						S						S	S	S		S																					T	T	S	S																		T		.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.											.	.	.	.	.	.	.					.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	I	R	G	L	A	R	Q	M	A	A	N	R	T	Q	I	I	A	G	W	C	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	Y	E	R	W	Q	E	E	F	A	T	A	P	K	F	T	A	I	G	Y	G	P	T
Template Known Secondary structure												T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions