Job Description P33225 Confidence 69.08% Date Thu Jan 5 11:51:24 GMT 2012 Rank 108 Aligned Residues 51 % Identity 20% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

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		687	.	.			690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		K	Y	P	.	.	L	H	L	Q	S	V	H	P	D	F	R	L	H	S	Q	L	C	E	S	E	T	L	R	Q	Q	Y	T	V	A	G	K	E	P	V	F	I	N	P	Q	D	A	S	A	R	G	I	R	N	G	D	V	V	R	V	F	N
Query Conservation					.	.
Alig confidence					.	.																				.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.
Template Sequence		R	Y	P	M	L	F	K	L	T	A	N	E	T	G	R	V	T	H	G	G	V	L	E	F	.	.	.	.	.	.	.	.	I	A	E	E	G	R	V	Y	L	P	Q	W	M	M	E	T	L	G	I	Q	P	G	S	L	L	Q	I	S	S
Template Known Secondary structure			S	S								T	T	T												.	.	.	.	.	.	.	.			S	S														T			T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions