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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank10Aligned Residues719
% Identity20%Templatec1kqgA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60........ .70.........80... ......90.........100.........110..
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Query Sequence  TDAVISKEGILTGSHWGAIRATVKD. . . . . . . GRFVAAKPFELDKYP. . . . SKMIAGLPDHVHNAARIRYPMVRVDWLRK
Query Conservation              
   
   
 
 
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Template Sequence  LRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRA. . . . .
Template Known Secondary structure  TTS
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S

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   41........50.........60.........70.........80.........90.........100.........110.....
 
   113......120.........130.........140.........150... ......160.........170.........180
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Query Sequence  RHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSA. . . . . . . . . . . . LLTASGWQSTGMFHNASGMLAKAIALH
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Template Sequence  . . . . . . P. . GSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGAS. . . NETGMLTQKFARSL
Template Known Secondary structure  ......T..T
SS




TTS
B
S
TTS
...T
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...
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   116 ...120.........130.........140.........150.........160.........170 .........180....
 
   181........190.........200.........210.........220.........230.........240.........250.........260
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Query Sequence  GNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAA
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Template Conservation 

 
                   
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Template Sequence  GMLAVDNQARVHGPTVASLAPTFGR. . . . GAMTNHWVDIKNANVVMVMGGNAAEAHPV. . . . . . . . . . . GFRWAMEAKNN
Template Known Secondary structure  TB

GGG

S
....
S
SS
TGGGGG
SS

S...........
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   185....190.........200......... 210.........220.........230........ .240.........
 
   261........270.........280.........290.........300.........310.........320..
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Query Sequence  GEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVG. . . . . . . . . . . . . . . . . .
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Template Sequence  NDATLIVVDPRFTRT. . . . ASVADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGY
Template Known Secondary structure  S


SS

....T
S


TT
TT
S
BSTTBBB
TT

TTTT
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   251........260..... ....270.........280.........290.........300.........310.........320......
 
   323......330.........340.........350.........360.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAAN. . .
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Template Sequence  DAEKRQYDKSSWNYQLDENGYAKRDETLTHPRCVWNLLKEHV. . . . . . SRYTPDVVENICGTPKADFLKVCEVLASTSAP
Template Known Secondary structure  TTTT

TTSSB
B
TTSSB
B
TTS
STTB......TT




GGGST
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   327..330.........340.........350.........360........ .370.........380.........390.........400
 
   366...370.........380.........390.........400.........410.........420.........430.......
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Query Sequence  . . RTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVH. . . . . .
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Template Conservation       
    
     

     
   
 

 


  



     
  
  
    
      
               
Template Sequence  DRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQS
Template Known Secondary structure  T

SSSTTTT
TTSTT
S


BTTTT
STTGGG

BTT

S
Template Predicted Secondary structure 





















































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   401........410.........420.........430.........440.........450.........460.........470.........480
 
   438.440.........450.........460.........470.........480........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPF
Query Conservation  .............................            
           
              

       

 
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Template Conservation                                                                      

       

 
Template Sequence  YLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPV
Template Known Secondary structure  S


SSSS


GGGGGGG

GGGGGGGGGS

BSS


TT


S

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   481........490.........500.........510.........520.........530.........540.........550.........560
 
   489490.........500.........510.........520.. .......530.........540.........550.
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Query Sequence  HRHQQINRIIEGLRKLETVIAIDNQWTSTCRFAD. . . . . . . . . . . . . . . . . IVLPATTQFERNDLDQYGNHSNRGIIAMK
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Template Sequence  ASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEED. . . GSIANSGRWLQWHW
Template Known Secondary structure  SS
TT
SSB

TGGGTTS

GGGG


GGG


B

GGGS
...
TTS
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   561........570.........580.........590.........600.........610.........620... ......630.......
 
   552.......560.........570.........580.........590.... .....600.....
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Query Sequence  QVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIW. . . . . . . . . . . . . . . . . . . . . . . . . . QEGVQQGKGRG
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Template Conservation    
 
 

   
 

   

  

                                                        
Template Sequence  KGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKG
Template Known Secondary structure 

S

STT
B


SSS



SSTTS


SS

TTS

TT
Template Predicted Secondary structure 










































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   638.640.........650.........660.........670.........680.........690.........700.........710.......
 
   606...610.........620.........630......
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Query Sequence  VHLPAFDDFWNNKEYVEFDHPQMFVRHQAFR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation                                 .................................................
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Template Conservation              
                                                                   
Template Sequence  QLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRML
Template Known Secondary structure 
B
S
GGG

SSSS
S
GGGTTSTTGGG
B



TTSSS

TTBSTTTT
SSTTGGGGB
TTS
BSSGGG

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   718.720.........730.........740.........750.........760.........770.........780.........790.......
 
   637..640.........650.........660. ........670.........680.
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Query Sequence  . . . . . . . . . . . . . EDPDLEPLGTPSGLIEIYSKTIADM. . . NYDDCQGHPMWFEKIERSHG. . . . . . . . . . . . . . . . . . .
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Template Conservation                        

 

                      
   

   
                     
Template Sequence  IQWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVVRLYEQ
Template Known Secondary structure 
SSSSS

SS
S

TTSS

S
TTSTTSSB
SS
TT
STT
SS





SS
TTSS
TT
TT

S
TT



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   798.800.........810.........820.........830.........840.........850.........860.........870.......
 
   682.......690.........700.........710.........720.........730.........740.........750.......
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Query Sequence  . . . . GPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVS
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Template Sequence  DALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAI. . . AQPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVT
Template Known Secondary structure  TT


TTT



TT

TTTGGGS...S
S

T

TT
TT
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   878.880.........890.........900.........910... ......920.........930.........940.........950....
 
   758.760.. .......770.........780.........790.........800.........810.......
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Query Sequence  DRYAP. . . . . . . . GVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEK
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Template Sequence  RRLKPLNVNGQQVETVGIPIHWG. . . . . . . FEGVARKGYIANTLTPNV. GDANSQTPEYKAFLVNIEK
Template Known Secondary structure  TTS

TT




.......SSSSS




GGGS

S
.B
TTT

B
TTS
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   955....960.........970....... ..980.........990..... ....1000.........1010....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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