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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank18Aligned Residues712
% Identity14%Templatec1g8jC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
Resolution2.03 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60...... ...70 ........
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Query Sequence  AATDAVISKEGILTGSHWGAIRATV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KDGR. . FVAAKPFE
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Template Conservation 
        
 
  
   

    
                        
  
   
           
    
    
 
Template Sequence  PPANAQRTNMTCHFCIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLASTLTPAMTNVVTEHDGARYDIMVVPDK
Template Known Secondary structure 

TT

SSBTT

TT



SSGGGSTT



SS


TTS



GGG
TTS

T
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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   7980... ......90....... ..100.........110.........120.........130.........140.........
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Query Sequence  LDKYP. . . . SKMIAGLPDHVHNA. . . . . ARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTH
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Template Sequence  ACVVNSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYAA. . . . . . . . . . . . . . . DEWVDTTWDHAMALYAGLIKKTLDSD
Template Known Secondary structure  T
TTTTT


TTGGGTGGGS

SSSTTTT


S
T...............T

T
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   90.........100.........110.........120........ .130.........140.........150....
 
   150......... 160.........170........ .180.........190.........200.........210.........220.......
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Query Sequence  GPSALLTASG. WQSTGMFHNASGMLAKAIA. LHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVL
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Template Sequence  GPQGVFFSCFDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGI. . . . GELNNAYEDAQLADVIWS
Template Known Secondary structure 
GGG



STT

TTS



SSSSSS

TTTT
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S

S
TT
S
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   155....160.........170.........180.........190.........200.........210.. .......220.........230
 
   228.230.........240.........250. ........260.........270.........280.... .....290....
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Query Sequence  WGSDLLKNQQANWWCPDHDVYEYY. . . . . AQLKAKVAAGEIEVISIDPVVTSTHEYLGREHV. . . . . . . . KHIAVNPQTD
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Template Sequence  IGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPS. . . . VAIARHVAGNDRVLHLAIEPGTD
Template Known Secondary structure  S

STTTTTSSS






SS

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GGG


TT
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   231........240.........250.........260.........270.........280... ......290.........300......
 
   295....300.........310.........320.........330.........340.........350.........360.... ...
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Query Sequence  VPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAA. . . . . . . NRT
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Template Sequence  TALFNGLFTYVVEQGWIDKPFIEAHTKGFDDAVKT. . . . . . . NRLSLDECSNITGVPVDMLKRAAEWSYKPKASGQAPRT
Template Known Secondary structure  T
S

.......T





S

TTSS


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   307..310.........320.........330.........340. ........350.........360.........370.........
 
   368.370.........380.........390.........400.........410.........420.........430.........440.......
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Query Sequence  QIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSS
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Template Sequence  MHAYEKGIIWGNDNYVIQSALLDLVIATHNVGRRGTGCVRMGGH. . . QEGYTRPPYPGDKKIYIDQELIKGKGRIMTWWG
Template Known Secondary structure 
TSTTTT
SSSTT


SB...
B




S
SS


T

SS
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   380.........390.........400.........410.........420... ......430.........440.........450......
 
   448.450.........460.........470.........480.........490.........500..... ....510.........520......
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Query Sequence  TIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLE. TVIAIDNQWTSTCRFADIVLP
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Template Sequence  CNNFQTSNNAQ. . . . . . . ALREAILQRSAIVKQAMQKARGATTEEMVDVIYEATQNGGLFVTSINLYPTKLAEAAHLMLP
Template Known Secondary structure 

STT.......TTT

TTTT

SS
TGGGGT
S
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   457..460....... ..470.........480.........490.........500.........510.........520.........
 
   527..530.........540.........550.........560.........570.........580.........590 ........
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Query Sequence  ATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWL. . . . . . . . KRIWQEGV
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Template Sequence  AAHPGEMN. . . LTSMNGERRIRLSEKFMDPPGTAMADCLIAARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGF
Template Known Secondary structure  B

BTTB
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TT



S

STT
B
TTT
T
S


SSTT
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   530....... ..540.........550.........560.........570.........580.........590.........600......
 
   599600.. .......610.........620.........630.........640.........650.........660....
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Query Sequence  QQGK. . . . . . . . . . . . . . GRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYD
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Template Sequence  RRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDESKGLVGTEMLYTEGKFDTDDGKAHFKPA. . . . . . . .
Template Known Secondary structure  TTTT
TT



TTGGGGGG

GGG
SS

B

TTT

B

S
S
TTS

SSTT





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   607..610.........620.........630.........640.........650.........660.........670........
 
   665....670.........680.........690.........700...... ...710.........720.........730.........740..
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Query Sequence  DCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLC. . ESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVR
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Template Sequence  . . . PWNGLPATVQQQ. . . . . KDKYRFWLNNGRNNEVWQTAYHDQYNSLMQE. . . RYPMAYIEMNPDDCKQLDVTGGDIVE
Template Known Secondary structure  ...



S
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S

SS

TT
TTGGG
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SS

T

TT
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   679680.........690 .........700.........710.........720. ........730.........740.......
 
   743......750.........760.........770.........780.........790.........800.........810.........820..
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Query Sequence  VFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTV
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Template Sequence  VYNDFGSTFAMVYPVAEIKRGQTFMLFGYVN. . . . . . . . . . . . . . GIQGDVTTDW. TDRDI. IPYYKGTWGDIRKV. GSM
Template Known Secondary structure  TT
TTS
TT
S
SS..............S
GGGG

S
.B
TT
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B
TT

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   748.750.........760.........770........ .780........ .790... ......800....... ..810
 
   823.... ..830..
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Query Sequence  EQVTA. . . FNGPV
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Template Conservation               
Template Sequence  SEFKRTVSFKSRR
Template Known Secondary structure 


S

S
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   811........820...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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