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Job DescriptionP33225
Confidence100.00%DateThu Jan 5 11:51:24 GMT 2012
Rank3Aligned Residues759
% Identity49%Templatec1eu1A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........60.........70.........80.........90.........100.........110.........120.........
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Query Sequence  KEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRV
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Template Sequence  GEVMSGCHWGV. FKARVENGRAVAFEPWDKDPAPSHQLPGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRV
Template Known Secondary structure  TT.TT
TT
SS

TTTTTSTTB

S
GGGS
GGGTTSS

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   6...10...... ...20.........30.........40.........50.........60.........70.........80....
 
   130.........140.........150........ .160.........170.........180.........190.........200........
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Query Sequence  SWDEALDMFYEELERVQKTHGPSALLTAS. GWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEV
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Template Sequence  TWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEV
Template Known Secondary structure 

GGG









SS

T

BS
SSSTTTSS

T
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   209210.........220.........230.........240.........250.........260.........270.........280.. .....
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Query Sequence  YEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGRE. HVKHI
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Template Sequence  YEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPD. . . . . HGAYAGMKALKEKGTRVIINPVRTET. . . . ADYFGADVV
Template Known Secondary structure  TS

S

SS

TT

SSB

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SB

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   165....170.........180.........190.........200 .........210.........220...... ...230.....
 
   288.290.........300.........310.........320.........330.........340.........350.........360.......
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Query Sequence  AVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRT
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Template Sequence  SPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTAEWAAEICGLPAEQIRELARSFVAGRT
Template Known Secondary structure 


TT
TT
S

TTTTTS




S
SS
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   368.370.........380.........390.........400.........410.........420.........430.........440.......
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Query Sequence  QIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSS
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Template Sequence  MLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDG. . . . . . . . . . . GEGGAT
Template Known Secondary structure 
SGGGSSTTTT
TTSTT
S
TTSTTTTS


S









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S
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   317..320.........330.........340.........350.........360.........370......... 380.....
 
   448.450.........460.........470.........480.........490.........500.........510.........520.......
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Query Sequence  TIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPA
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Template Sequence  SIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHADIVLPA
Template Known Secondary structure  GGG
TT
TT




S

SS
GGG
SSB

T
SB
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   396...400.........410.........420.........430.........440.........450.........460.........470.....
 
   528.530.........540.........550.........560.........570.........580.........590.........600.......
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Query Sequence  TTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVH
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Template Sequence  TTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEFTEGRDEMGWISSFYEAAVKQAEFKNVA
Template Known Secondary structure 

GGGS

TTT




S


TT
B
TT
TT

TT

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   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   608.610.........620........ .630.........640.........650.........660.........670.........680......
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Query Sequence  LPAFDDFWNNKEYVEFDHPQM. FVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQ
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Template Sequence  MPSFEDFWSEGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERL. . GGAGA
Template Known Secondary structure 






SGGGG

TT
TTTS

SSTTSSSS


TTS
SS





SS
T..T
TT
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   556...560.........570.........580.........590.........600.........610.........620........ .630...
 
   687..690.........700.........710.........720.........730.........740.........750.........760......
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Query Sequence  KYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVAR
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Template Sequence  KYPLHVVASHPKSRLHSQLNGT. SLRDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGAKVSDAVMPGAIQ
Template Known Secondary structure 
SS



SSSBTTBTTTS.GGGGGT
BTTB

TTT

TT

SS

TTB
TT
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   634.....640.........650..... ....660.........670.........680.........690.........700.........710..
 
   767..770.........780.........790.........800.........810.........820.........830..
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Query Sequence  IHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPV
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Template Sequence  IYEGGWYDPLDPSEEGTLDKYGDVNVLSLDVGTSKLAQGNCGQTILADVEKYAGAPVTVTVFDTPK
Template Known Secondary structure 

TT



BS
TTSTT

BSS

GGGS




S
TTT



TT



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TTS

T
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   713......720.........730.........740.........750.........760.........770........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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