Job Description P75957 Confidence 95.54% Date Thu Jan 5 12:16:25 GMT 2012 Rank 388 Aligned Residues 130 % Identity 14% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	V	S	F	S	V	G	E	G	E	M	M	A	I	V	G	S	S	G	S	G	K	S	T	L	L	H	L	L	G	G	L	D	T	P	T	S	G	D	V	I	F	N	G	Q	P	M	S	K	L	S	S	A	A	K	A	E	L	R	N	Q	K	L	G	F	I	Y	Q	F	H	H	L	L	P	D	F	T	A	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	V	L	V	V	S	A	D	V	Y	R	.	.	.	.	.	.	.
Template Known Secondary structure						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B						S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																							130	.	.	.	.	.	.	.	.	.	140	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	V	A	M	P	L	L	I	G	K	K	K	P	A	E	I	N	S	R	A	L	E	M	L	K	A	V	G	L	D	H	R	A	N	H	R	P	S	E	L	S	G	G	E	R	Q	R	V	A	I	A	R	A	L	V	N	N	P	R	L	V	L	A	D	E	P	T	G	N	L	D	A	R	N	A	D	S	I	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.													.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	.	.	L	K	F	Y	D	V	L	L	V	D	T	A	.	.	G	R	L	H	V	D	E	A	M	M	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S											T	T							S	S				T	T												.	.		T	T		S								.	.				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.													.	.
Template SS confidence
																142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	G	E	L	N	R	L	Q	G	T	A	F	L	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V
Template Known Secondary structure													S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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