Job Description P0AEY8 Confidence 2.86% Date Wed Jan 25 15:20:32 GMT 2012 Rank 16 Aligned Residues 373 % Identity 8% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	R	L	G	R	Q	A	L	L	F	P	L	C	L	V	L	Y	E	F	S	T	Y	I	G	N	D	M	I	Q	P	G	M	L	A	V	V	E	Q	Y	Q	A	G	I	D	W	V	P	T	S	M	T	A	Y	L	A	G	G	M	F	L	Q	W	L	L	G	P	L	S	D	R	I	G	R	R	P	V	M	L	A
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	R	F	N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	.	.	.	.	.	.	.	.	.	.	.	V	V	W	T	D	V	I	Q	V
Template Known Secondary structure					T																			T																	T	T																	T	T		.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.												.	180	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	V	W	F	I	V	T	C	L	A	I	L	L	A	Q	N	I	E	Q	F	T	L	L	R	F	L	Q	G	I	S	L	C	F	I	G	A	V	G	Y	A	A	I	Q	E	S	F	E	E	A	V	C	I	K	I	T	A	L	M	A	N	V	A	L	I	A	P	L	L	G	P	L	V	G	A	A	W	I	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R
Template Known Secondary structure																					T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		168															.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	E	G	M	F	V	L	F	A	A	L	A	A	I	S	F	F	G	L	Q	R	A	M	P	E	T	A	T	R	I	G	E	K	L	S	L	K	E	L	G	R	D	Y	K	L	V	L	K	N	G	R	F	V	A	G	A	L	A	L	G	F	V	S	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V
Template Known Secondary structure				S	S	S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	A	W	I	A	Q	S	P	I	I	I	I	T	G	E	Q	L	S	S	Y	E	Y	G	L	L	Q	V	P	I	F	G	A	L	I	A	G	N	L	L	L	A	R	L	T	S	R	R	T	V	R	S	L	I	I	M	G	G	W	P	I	M	I	G	L	L	V	A	A	A	A	T	V	I	S	S	H	A	Y
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G
Template Known Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	T							S		S		S	S																					G	G	G	G	G	G		S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380													.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	M	T	A	G	L	S	I	Y	A	F	G	I	G	L	A	N	A	G	L	V	R	L	T	L	F	A	S	D	M	S	K	G	T	V	S	A	A	M	G	M	L	Q	M	L	I	F	T	V	G	I	E	I	S	K	H	A	W	L	N	G	G	N	G	L	F	N	L	F	N	L	V	N	G	I	L	W	L	S
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	.	.	.	.	.	.	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V	I	A
Template Known Secondary structure												T	T	T															T	T										.	.	.	.	.	.													T	S	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.							460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	V	I	F	L	K	D	K	Q	M	G	N	S	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	S	L	S	T	S	I	N	D	D	D	P	K	G	I
Template Known Secondary structure						T	T		S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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