Job Description P0CF29 Confidence 3.42% Date Thu Jan 5 11:30:51 GMT 2012 Rank 73 Aligned Residues 67 % Identity 4% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	P	Q	H	D	F	T	S	L	K	K	L	R	P	Q	S	V	T	S	R	I	Q	P	G	S	D	V	I	V	C	A	E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y	L	.	.	.	.	.	.	.	.	I	F	K	L	N	A	E	S	K	L	Y	I	W	N	V	K	L	T	H	T	G	.	.	.	.	F	F	L	V	N	Y	N	Y	P	T	V	I	Q	L	C	N
Template Known Secondary structure												T	T										T	T	S	T	T					.	.	.	.	.	.	.	.				S	S	T	T	S											S	S	S	.	.	.	.				T	T				S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions