Job Description P0CF29 Confidence 93.19% Date Thu Jan 5 11:30:51 GMT 2012 Rank 8 Aligned Residues 108 % Identity 12% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	.	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	W	Q	M	D	C	T	H	L	E	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	W	P	I	T	H	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K	M	V	A	W	W	I	G	I	E	Q	S
Template Known Secondary structure		T										T	T									T	T	T	T								S	S															T	T	S											T	T	T	T												T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
					111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	K	G	K	L	H	V	I	S	K	R	Y	T	Q	R	I	E	R	H	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I
Query Conservation		.	.	.
Alig confidence		.	.	.									.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		F	G	V	P	Y	N	P	Q	S	Q	G	.	.	.	.	.	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	I	E	T	I	V	L	M	A	V	H	C	M
Template Known Secondary structure			S	S		S	S	S	T	T	T	T	.	.	.	.	.																	G	G	G		S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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