Job Description P0CF29 Confidence 88.75% Date Thu Jan 5 11:30:51 GMT 2012 Rank 12 Aligned Residues 119 % Identity 12% Template c3dlrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																									.																								.
Query SS confidence																																																									.																								.
Query Sequence		V	C	A	E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	.	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	K	G	K	L	H	V	.
Query Conservation																																																									.																								.
Alig confidence								.																																																	.																								.
Template Conservation								.
Template Sequence		D	K	F	F	I	D	.	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	X	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	N	V	L	T	S	I	A	I	P	K	V	I	H	S	D	Q	G	A	A	F	T	S	S	T	F	A	E	W	A	K	E
Template Known Secondary structure		S						.						S		B	T	T	B									T	T	T									S	S	S													T	T	T				S						S						S
Template Predicted Secondary structure								.
Template SS confidence
		123	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	K	R	Y	T	Q	R	I	E	R	H	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I	G	H	Y
Query Conservation
Alig confidence																														.	.
Template Conservation																														.	.
Template Sequence		R	G	I	H	L	E	F	S	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	G	R	P	.	.	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L
Template Known Secondary structure			T																							T	T		G	.	.	G	G
Template Predicted Secondary structure																														.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions