Job Description P0CF29 Confidence 3.06% Date Thu Jan 5 11:30:51 GMT 2012 Rank 86 Aligned Residues 67 % Identity 16% Template c2exuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Resolution 2.23 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.
Predicted Secondary structure																											.	.	.																																									.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.																																									.	.	.	.	.	.	.	.	.
Query Sequence		S	V	T	S	R	I	Q	P	G	S	D	V	I	V	C	A	E	M	D	E	Q	W	G	Y	V	.	.	.	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	.	.	.	.	.	.	.	.	.	S	P	F
Query Conservation																											.	.	.																																									.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.				.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	K	V	D	G	R	L	P	A	E	V	V	E	L	L	P	.	.	.	.	.	H	Y	K	P	R	D	G	S	G	S	A	T	I	W	G	V	.	.	.	.	.	.	.	.	.	.	.	.	R	C	R	P	G	K	E	K	E	L	I	R	K	L	L	K	K	K	F	N	L	D	R	A	M	G	K	K	K	L
Template Known Secondary structure							S								T	T		T	.	.	.	.	.	T				T	T	S		S								.	.	.	.	.	.	.	.	.	.	.	.				T	T																				S		S	S
Template Predicted Secondary structure																			.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.													.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		94	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		D	V	.	V	I	W	M	T	D	G	W	P	L	Y	E	S	R
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		K	I	L	S	I	F	Q	R	D	N	Y	T	G	R	I	Y	I
Template Known Secondary structure										T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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