Job Description P0CF29 Confidence 94.82% Date Thu Jan 5 11:30:51 GMT 2012 Rank 5 Aligned Residues 105 % Identity 16% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																				.																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	.	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.																																				.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.								.	.	.	.																			.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.								.	.	.	.
Template Sequence		Q	L	D	.	.	C	T	H	L	E	G	K	.	.	.	.	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	V	K	T	I	H	T	D	N	G	S	N	F	T	G	A	T	V	R	A	A	C	D	W	A	G	I
Template Known Secondary structure					.	.					T	T		.	.	.	.								T	T	T									S	S	S	S	T	T													S																							T	T	T	T
Template Predicted Secondary structure					.	.								.	.	.	.
Template SS confidence
		62	.	.			.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
					111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	K	G	K	L	H	V	I	S	K	R	Y	T	Q	R	I	E	R	H	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I
Query Conservation		.	.	.
Alig confidence		.	.	.										.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		K	Q	E	D	G	I	P	Q	S	Q	G	V	.	.	.	.	.	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	H	L	K	T	A	V	Q	M	A	V	F	I	H
Template Known Secondary structure										S	S			.	.	.	.	.																G	G	G		S	S	S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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