Job Description P0CF29 Confidence 89.45% Date Thu Jan 5 11:30:51 GMT 2012 Rank 11 Aligned Residues 100 % Identity 16% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																								.	.																					.	.	.	.
Query SS confidence																																																								.	.																					.	.	.	.
Query Sequence		C	A	E	M	D	E	Q	W	G	Y	V	G	A	K	S	R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	.	.	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	K	G	K	.	.	.	.
Query Conservation																																																								.	.																					.	.	.	.
Alig confidence								.	.																																															.	.																					.	.	.	.
Template Conservation								.	.
Template Sequence		I	W	Q	T	D	F	.	.	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	G	R	P	K	A	I	K	T	D	N	G	S	C	F	T	S	K	S	T	R	E	W	L	A	R
Template Known Secondary structure								.	.				G	G	G		S	S									T	T	T									S	S																					S						S						S
Template Predicted Secondary structure								.	.
Template SS confidence
		60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
					114	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.								.	.	.	.
Query SS confidence		.	.	.								.	.	.	.
Query Sequence		.	.	.	L	H	V	I	S	K	R	.	.	.	.	Y	T	Q	R	I	E	R	H	N	L	N	L	R	Q	H	L	A	R	L	G	R
Query Conservation		.	.	.								.	.	.	.
Alig confidence		.	.	.								.	.	.	.
Template Conservation
Template Sequence		W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E
Template Known Secondary structure			T								S	S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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