Job Description P0AE24 Confidence 99.97% Date Thu Jan 5 11:22:19 GMT 2012 Rank 3 Aligned Residues 411 % Identity 12% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		R	S	L	R	D	T	R	R	M	N	M	F	V	S	V	A	A	A	V	A	G	L	L	F	G	L	D	I	G	V	I	A	G	A	L	P	F	.	I	T	D	H	F	V	L	T	S	R	L	Q	E	W	V	V	S	S	M	M	L	G	A	A	I	G	A	L	F	N	G	W	L	S	F	R	L	G	R	K	Y	S
Query Conservation																																							.
Alig confidence													.	.	.	.	.	.																					.
Template Conservation													.	.	.	.	.	.
Template Sequence		Y	Y	L	K	N	T	N	F	W	M	F	.	.	.	.	.	.	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y
Template Known Secondary structure						S							.	.	.	.	.	.																																															T												T	T		T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	A	G	A	I	L	F	V	L	G	S	I	G	S	A	F	A	T	S	V	E	M	L	I	A	A	R	V	V	L	G	I	A	V	G	I	A	S	Y	T	A	P	L	Y	L	S	E	M	A	S	E	N	V	R	G	K	M	I	S	M	Y	Q	L	M	V	T	L	G	I	V	L	A	F	L	S	D	T	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	W	I	I	T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A
Template Known Secondary structure												T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	S	G	N	W	R	A	M	L	G	V	L	A	L	P	A	V	L	L	I	I	L	V	V	F	L	P	N	S	P	R	W	L	A	E	K	G	R	H	I	E	A	E	E	V	L	R	M	L	R	D	T	S	E	K	A	R	E	E	L	N	E	I	R	E	S	L	K	L	K	Q	G	G	W	A	L	F	K	I
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	V	G	I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L
Template Known Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S				S		S	S	S		S	S					S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	N	V	R	R	A	V	F	L	G	M	L	L	Q	A	M	Q	Q	F	T	G	M	N	I	I	M	Y	Y	A	P	R	I	F	K	M	A	G	F	T	T	T	E	Q	Q	M	I	A	T	L	V	V	G	L	T	F	M	F	A	T	F	I	A	V	F	T	V	D	K	A	G	R	K	P	A	L	K	I	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G
Template Known Secondary structure		T	T	S	S																												T	T	S	S	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		S	V	M	A	L	G	T	L	V	L	G	Y	C	L	M	Q	F	D	N	G	T	A	S	S	G	L	S	W	L	S	V	G	M	T	M	M	C	I	A	G	Y	A	M	S	A	A	P	V	V	W	I	L	C	S	E	I	Q	P	L	K	C	R	D	F	G	I	T	C	S	T	T	T	N	W	.	V	S	N	M	I
Query Conservation																																																																												.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																																																			.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	M	S	V	R	I	I	G	S	S	F	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F
Template Known Secondary structure													T	.	.	.	.	.	.	.	.	.	.	.	.																																	S		G	G	G										T	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.													.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	T	F	L	T	L	L	D	S	I	G	A	A	G	T	F	W	L	Y	T	A	L	N	I	A	F	V	G	I	T	F	W	L	I	P	E	T	K	N	V	T	L	E	H	I	E	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	V	L	A	G	N	M	Y	E	S	I	G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S	L	L	R	R	Q	V	N
Template Known Secondary structure																																					S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.