 |
Job Description | P0ABM1 | Confidence | 3.04% | Date | Thu Jan 5 11:15:49 GMT 2012 |
Rank | 14 | Aligned Residues | 91 |
% Identity | 13% | Template | c2vpzG_ |
PDB info |
PDB header:oxidoreductase | Chain: G: PDB Molecule:hypothetical membrane spanning protein; |
PDBTitle: polysulfide reductase native structure
|
Resolution | 2.40 Å |
|
 |
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
|
. | . | . | 60 | |
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  | . | . |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | V | V | V | L | T | V | G | W | I | W | G | F | G | F | A | P | A | D | Y | Q | Q | G | N | S | Y | R | I | . |
. |
I | Y | L | H | . |
. |
. |
. |
V | P | A | A | I | W | S | M | G | I | Y | A | S | M | A | V | A | A | F | I | G | L | V | W | Q | M | K | M | A | N | L | A | V | A | A | M | A | P | I | G | A | V |
Query Conservation |   |
  |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |
|   |   |   |
|
| . | . |   |
|
|
| . | . | . | . |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |   |
|   |
|
|   |
|   |
|
|   |
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|
|
|   |   |
|   |   |   |   |   |
| . | . |   |
|
|   |
|   |
|   |   |
|
|   |
Template Sequence |   |
Y | T | L | Y | A | L | M | L | I | A | L | D | L | F | I | L | W | A | E | S | P | A | R | F | R | F | T | H | I | W | L | F | L | S | F | H | P | T | S | P | I | W | W | G | A | W | G | L | G | L | G | F | L | T | G | G | L | L | Y | L | G | K | G | S | Q | R | . |
. |
A | L | A | W | A | L | L | V | F | S | L | V |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T | G | G | G | T |
| G | G | G | G | G | S | S |
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S |
| S | S | . | . | S |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
48 | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
. | . | . | . | . | . | 120 | . | . | . | . | . |
  |
  |   |
103 | |
. | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
Predicted Secondary structure |   |
 | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | . |
T | F | I | A | L | V | T | G | S | A | W | G | K | P | M | W | G | T |
Query Conservation |   |
| . |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |
|
|   |
Alig confidence |   |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
|
|
|
|   |   |
|
|
|
|
|
|   |
Template Sequence |   |
A | L | S | Y | P | G | L | A | L | A | V | N | L | N | R | P | L | W | N | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T |
| T | T |
| T | T | S |
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|