Job Description P45395 Confidence 80.61% Date Thu Jan 5 12:02:32 GMT 2012 Rank 157 Aligned Residues 134 % Identity 18% Template c3bbnB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																			.																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																			.																																						.	.	.	.	.	.	.	.	.
Query Sequence		L	A	E	L	D	Q	Y	I	N	Q	N	F	T	L	A	C	E	K	M	F	W	C	K	G	K	V	V	V	M	G	M	G	K	.	S	G	H	I	G	R	K	M	A	A	T	F	A	S	T	G	T	P	S	F	F	V	H	P	G	E	A	A	H	G	D	L	G	M	V	T	P	.	.	.	.	.	.	.	.	.
Query Conservation																																			.																																						.	.	.	.	.	.	.	.	.
Alig confidence										.																									.																								.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation										.																																																	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	R	T	A	R	F	L	.	S	E	A	C	D	L	V	F	D	A	S	S	R	G	K	Q	F	L	I	V	G	T	K	N	K	A	A	D	S	V	A	R	A	A	I	R	A	R	C	H	Y	V	N	K	K	W	L	G	.	.	.	.	.	.	.	.	.	G	M	L	T	N	W	S	T	T	E	T	R	L	H
Template Known Secondary structure									T	.							S					T	T	T										T	T	T												T						S	S			S	.	.	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure										.																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.										.	.	.	.	.	.	.	110	.	.	.	.	.	.
																																															97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	V	V	I	A	I	S	N	S	G	E	S	S	E	I	T	A	L	I	P	V	L	K	R	L	H	V	P	L	I	C	I	T	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																																											.	.	.	.
Template Sequence		K	F	R	D	L	R	M	E	Q	T	A	G	R	L	A	R	L	P	K	R	D	A	A	V	V	K	R	Q	L	S	H	L	Q	T	Y	L	G	G	I	K	Y	M	T	G	L	P	D	I	V	I	I	V	D	Q	Q	E	E	.	.	.	.	Y	T	A	L	R	E	C	I	T	L	G	I	P	T	I	C	L	I	D
Template Known Secondary structure									S	T	T	S	T	T	T	T	T	S																T	T	S	T	T	S	T	T	S			S			S					S		T	T	T	T	.	.	.	.									T	T	T
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	S	S	M	A	R	A	A	D	V	H	L	C	V	K	V	A	K	E	A	C	P	L	G	L	A	P	T	S	S	T	T	A	T	L	V	M	G	D	A	L	A	V	A	L	L	K	A	R	G	F	T	A	E	D
Query Conservation
Alig confidence							.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	C	N	P	.	.	D	L	A	D	I	S	I	P	A	N	D	D	.	.	.	.	.	.	.	.	.	.	.	.	A	I	A	S	I	R	L	I	L	T	K	L	V	F	A	I	C	E	G	R	S	S	Y	I	R	N
Template Known Secondary structure		S	S	S			.	.	S	S		S							S	S	.	.	.	.	.	.	.	.	.	.	.	.	S																		T	S	S
Template Predicted Secondary structure							.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.													210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions