Job Description P45395 Confidence 92.49% Date Thu Jan 5 12:02:32 GMT 2012 Rank 126 Aligned Residues 135 % Identity 15% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		L	A	E	L	D	Q	Y	I	N	Q	N	F	T	L	A	C	E	K	M	F	W	C	K	G	K	V	V	V	M	G	M	G	K	.	S	G	H	I	G	R	K	M	A	A	T	F	A	S	T	G	T	P	S	F	F	V	H	P	G	E	A	A	H	G	D	L	G	M	V	T	P	Q	D	V	V	I	A	I	S	N
Query Conservation																																			.
Alig confidence																			.	.															.																									.	.
Template Conservation																			.	.																																								.	.
Template Sequence		L	K	R	T	W	E	K	L	L	L	A	A	R	A	I	V	A	.	.	I	E	N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	.	.	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D	P
Template Known Secondary structure																			.	.	S	S		G	G	G							S																					S	S					.	.				T	T		S	S					S					S		T
Template Predicted Secondary structure																			.	.																																								.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	E	S	S	E	I	T	A	L	I	P	V	L	K	R	L	H	V	P	L	I	C	I	T	G	R	P	E	S	S	M	A	R	A	A	D	V	H	L	C	V	K	V	A	K	E	A	C	P	L	G	L	A	P	T	S	S	T	T	A	T	L	V	M	G	D	A	L	A	V	A	L	L	K	A	R	G
Query Conservation
Alig confidence					.	.	.	.																									.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																									.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	D	.	.	.	.	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	L	.	.	R	Y	V	D	I	A	I	P	C	N	N	K	.	.	.	.	.	.	.	.	.	.	.	.	G	A	H	S	V	G	L	M	W	W	M	L	A	R	E	V	L	R	M	R	G
Template Known Secondary structure		T	T	T	.	.	.	.											T									T	T				.	.	T	T		S					S		S	S	.	.	.	.	.	.	.	.	.	.	.	.																					S
Template Predicted Secondary structure					.	.	.	.																									.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.													.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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