Return to main results Retrieve Phyre Job Id

Job DescriptionP23003
Confidence99.83%DateWed Jan 25 15:20:43 GMT 2012
Rank18Aligned Residues270
% Identity14%Templatec3dmgA_
PDB info PDB header:transferaseChain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40 .........50.........60.........70.........80.........90........
Predicted Secondary structure 








.




















Query SS confidence 




















.

























































Query Sequence  VRLQSMMAPFSDLVPEVFRSP. VSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN
Query Conservation    
   
 
       
   
.   



    
         
     
  

 
  
 
    
      
   
   
Alig confidence 




















.

























































Template Conservation        
   
                
                  
                             
   
Template Sequence  RAAFRCLTASGLQARLALPWEAAAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARAL
Template Known Secondary structure  TT




GGGS
TT


GGG
GGGT
Template Predicted Secondary structure 































Template SS confidence 















































































   76...80.........90.........100.........110.........120.........130.........140.........150.....
 
   99100.........110.........120.........130.........140.........150.........160.........170........
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  PVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE
Query Conservation                       
  
               
                            
   
      
Alig confidence 








......................................
































Template Conservation           ......................................                                 
Template Sequence  LGYGVVVRR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGPYRVALLEKEKEAPPLPSLWRAFSARILGAE
Template Known Secondary structure  S
......................................TT

S








TT
Template Predicted Secondary structure 




......................................


























Template SS confidence 















































































   156...160.... .....170.........180.........190.......
 
   179180.........190... ......200......... 210.........220.........230.........240.........250....
Predicted Secondary structure 






.


...













Query SS confidence 














.















. . .












































Query Sequence  MIYRQVENSFTQPNA. AMNIQMLEWALDVTKG. . . SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA
Query Conservation    
 
 
 



 
 .     
   
      ...    



 

 
  

 

     
 


    

  
  
   
Alig confidence 














.















...












































Template Conservation        

 
     
     
       
         



 

 
            
  

    

  
  
   
Template Sequence  YTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA
Template Known Secondary structure 
TT
TTTTS


TTTTTT
T
TTSTTTT
SB
Template Predicted Secondary structure 































Template SS confidence 















































































   198.200.........210.........220.........230.........240.........250.........260.........270.......
 
   255....260.........270.........280.........290.........300. ........310.........320...
Predicted Secondary structure 



























...........





Query SS confidence 














































. . . . . . . . . . .





















Query Sequence  NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP. . . . . . . . . . . RSGLDSETEKMVQAYPRILYIS
Query Conservation 
 
 
                                  
  
 


...........
 
              




Alig confidence 


.










................















...........





















Template Conservation     .       
   ................       

 

 


               
      
 


 
  
 
Template Sequence  NAL. KAQALHSDVDE. . . . . . . . . . . . . . . . ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS
Template Known Secondary structure  TT
.


STTT................TS
TT






TT
SS

Template Predicted Secondary structure 


.




................

















Template SS confidence 















































































   278.280 .........290. ........300.........310.........320.........330.........340
 
   324.....330.........340....
Predicted Secondary structure 





Query SS confidence 




















Query Sequence  CNPETLCKNLETLSQTHKVER
Query Conservation 
 
 

 


  
   
    
Alig confidence 




















Template Conservation     
     
   
       
Template Sequence  NPFLKYEPLLEEKFGAFQTLK
Template Known Secondary structure 
TTS
S

Template Predicted Secondary structure 





Template SS confidence 




















   341........350.........360.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions