Job Description P23003 Confidence 99.83% Date Wed Jan 25 15:20:43 GMT 2012 Rank 18 Aligned Residues 270 % Identity 14% Template c3dmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy Resolution 1.55 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		V	R	L	Q	S	M	M	A	P	F	S	D	L	V	P	E	V	F	R	S	P	.	V	S	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	D	D	L	Y	H	I	I	F	D	Q	Q	T	K	S	R	I	R	V	D	S	F	P	A	A	S	E	L	I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		R	A	A	F	R	C	L	T	A	S	G	L	Q	A	R	L	A	L	P	W	E	A	A	A	G	A	Y	D	L	V	V	L	A	L	P	A	G	R	G	T	A	Y	V	Q	A	S	L	V	A	A	A	R	A	L	R	M	G	G	R	L	Y	L	A	G	D	K	N	K	G	F	E	R	Y	F	K	E	A	R	A	L
Template Known Secondary structure											T	T								G	G	G	S		T	T											G	G	G																												G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	R	H	K	L	F	Q	I	D	Y	L	T	T	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	R	A	T	K	T	K	I	E	L	D	Q	D	Y	I	D	E	R	L	P	V	A	G	K	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	Y	G	V	V	V	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	P	Y	R	V	A	L	L	E	K	E	K	E	A	P	P	L	P	S	L	W	R	A	F	S	A	R	I	L	G	A	E
Template Known Secondary structure			S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T										S																	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.																																							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																	.																	.	.	.
Query SS confidence																	.																	.	.	.
Query Sequence		M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	.	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	.	.	.	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A
Query Conservation																	.																	.	.	.
Alig confidence																	.																	.	.	.
Template Conservation
Template Sequence		Y	T	F	H	H	L	P	G	V	F	S	A	G	K	V	D	P	A	S	L	L	L	L	E	A	L	Q	E	R	L	G	P	E	G	V	R	G	R	Q	V	L	D	L	G	A	G	Y	G	A	L	T	L	P	L	A	R	M	G	A	E	V	V	G	V	E	D	D	L	A	S	V	L	S	L	Q	K	G	L	E	A
Template Known Secondary structure								T	T		T	T	T	T	S																		T	T	T	T	T	T							T		T	T	S	T	T							T	T								S	B
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.												.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	.	.	.	.	.	.	.	.	.	.	.	R	S	G	L	D	S	E	T	E	K	M	V	Q	A	Y	P	R	I	L	Y	I	S
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	L	.	K	A	Q	A	L	H	S	D	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	T	E	E	A	R	F	D	I	I	V	T	N	P	P	F	H	V	G	G	A	V	I	L	D	V	A	Q	A	F	V	N	V	A	A	A	R	L	R	P	G	G	V	F	F	L	V	S
Template Known Secondary structure		T	T		.								S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		T	T														T	T		S	S
Template Predicted Secondary structure					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280		.	.	.	.	.	.	.	.	.	290	.																	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	V	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	F	L	K	Y	E	P	L	L	E	E	K	F	G	A	F	Q	T	L	K
Template Known Secondary structure			T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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