Job Description P23003 Confidence 100.00% Date Wed Jan 25 15:20:43 GMT 2012 Rank 5 Aligned Residues 306 % Identity 12% Template c3c0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.													.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.									.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.									.	.	.	.
Query Sequence		V	S	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	D	D	L	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	I	I	F	D	Q	Q	T	K	S	R	I	R	V	.	.	.	.	D	S	F	P	A	A	S	E	.	.	.	.	L	I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.									.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		P	W	V	F	S	G	A	V	A	R	X	E	G	K	A	S	L	G	E	T	I	D	I	V	D	H	Q	G	K	W	L	A	R	G	A	Y	S	P	A	S	Q	I	R	A	R	V	W	T	F	D	P	S	E	S	I	D	I	A	F	F	S	R	R	L	Q	Q	A	Q	K	W	R	D	W	L	A	Q	K	D	G	L
Template Known Secondary structure		S				G	G	G						S				T	T								T	T											T	T	S	S	S							S		T	T				S																							T
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.								.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Query Sequence		L	R	H	K	L	F	Q	.	.	.	.	.	.	.	.	I	D	Y	L	T	T	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	.	.	.	.	.	.	.	R	A	T	K	T	K	I	E	L	D	Q
Query Conservation									.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.							.	.																																								.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		D	S	Y	R	L	I	A	G	E	S	D	G	L	P	G	I	T	I	D	R	F	.	.	G	N	F	L	V	L	Q	L	L	S	A	G	A	E	Y	Q	R	A	A	L	I	S	A	L	Q	T	L	Y	P	E	C	S	I	Y	D	R	S	D	V	A	V	R	K	K	E	G	X	E	L	T	Q	G	P	V	T	G	E
Template Known Secondary structure		S							G	G	G	G	T		T	T							.	.	T	T								S						T													T	T										T					T	T										S
Template Predicted Secondary structure																							.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		D	Y	I	D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	.	F	D	R	V	L	A	T	E	I	A	K	P	S
Query Conservation																																																																				.
Alig confidence				.																																								.																								.
Template Conservation				.																																								.
Template Sequence		L	P	.	P	A	L	L	P	I	E	E	H	G	X	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	.	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	X	G	G	C	S	Q	V	V	S	V	D	T	S	Q	E	A
Template Known Secondary structure				.		S	S						T	T							T	T	T	S	S	T	T	S	S		G	G	G											.		T	T							T		T	T	T									T	T		S							S
Template Predicted Secondary structure				.																																								.
Template SS confidence
		178	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																.	.	.	.	.
Predicted Secondary structure															.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	A	Q	Y	N	I	A	A	N	H	I	.	.	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	L	D	S
Query Conservation															.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.																				.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	.	.	.	.	.	.	.	.	.	.	.	.	R	G	E	K	F	D	V	I	V	X	D	P	P	K	F	V	E	N	K	S	Q	L	X	G	A	C	R	G	Y	K	D	I	N	X
Template Known Secondary structure												T	T			G	G	G						S												.	.	.	.	.	.	.	.	.	.	.	.	T	T											S	S		S	S	T	T		S	S	S				T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.													290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.							.	.	.	340	.	.	.	.	.					.	.	.	.	350						.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																															.	.	.	.	.	.										.	.	.	.						.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.										.	.	.	.						.	.	.	.	.
Query Sequence		E	T	E	K	M	V	Q	A	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	.	.	.	.	.	.	S	Q	T	H	K	V	E	R	L	.	.	.	.	A	L	F	D	Q	.	.	.	.	.	F	P	Y	T	H	H	M	E	C	G	V	L
Query Conservation																															.	.	.	.	.	.										.	.	.	.						.	.	.	.	.
Alig confidence																															.	.	.	.	.	.										.	.	.	.						.	.	.	.	.
Template Conservation
Template Sequence		L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	X	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L	Y	L	K	G	F	A	C
Template Known Secondary structure						T														T	T																		T													T	T	S				T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions