Job Description P23003 Confidence 99.48% Date Wed Jan 25 15:20:43 GMT 2012 Rank 46 Aligned Residues 156 % Identity 15% Template c2yvlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	D	V	T	K	G	S	K	G	.	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		D	E	V	I	G	K	P	E	G	V	K	I	N	G	F	E	V	Y	R	P	T	L	E	E	I	I	L	L	G	F	E	R	K	T	Q	I	I	Y	P	K	D	S	F	Y	I	A	L	K	L	N	L	N	K	E	K	R	V	L	E	F	G	T	G	S	G	A	L	L	A	V	L	S	E	V	A	G	E	V	W	T
Template Known Secondary structure		G	G	T	T	T			T	T				T	T																S			S	S															T	T			T	T									T	T	S										S	S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																						.																																														.
Query SS confidence																						.																																														.
Query Sequence		T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	.	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	.	S	G	L	D	S	E	T	E	K	M	V	Q	A
Query Conservation																						.																																														.
Alig confidence																						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	A	V	E	E	F	Y	K	T	A	Q	K	N	L	K	K	F	N	L	G	K	N	V	K	F	F	N	V	D	F	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	V	P	E	G	I	F	H	A	A	F	V	D	V	R	E	P	W	H	Y	L	E	K	V	H	K	S	L	M	E
Template Known Secondary structure				S	S														T	T			T	T						S		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				T	T		B	S						S	S		G	G	G	G								B		T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	V	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	P	V	G	F	L	L	P	T	A	N	Q	V	I	K	L	L	E	S	I	E	N	Y	F	G	N	L	E	V
Template Known Secondary structure		T								S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions