Job Description P23003 Confidence 100.00% Date Wed Jan 25 15:20:43 GMT 2012 Rank 4 Aligned Residues 320 % Identity 20% Template c2vs1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780; PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine Resolution 2.1 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	P	T	E	Q	Y	E	A	Q	L	A	E	K	V	V	R	L	Q	S	M	M	A	P	F	S	D	L	V	P	E	V	F	R	S	P	V	S	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	D	D	L	Y	H	I	I	F	D	Q	Q	T	K	S	R	I	R	V	D	S	F	P	A	A	S	E	L	I
Query Conservation
Alig confidence																												.	.	.																								.	.	.	.						.												.
Template Conservation																												.	.	.																								.	.	.	.						.												.
Template Sequence		T	L	Q	H	L	N	Y	D	Y	Q	L	E	F	K	R	K	K	L	K	R	I	L	G	F	E	V	.	.	.	E	V	V	P	S	P	K	I	F	G	H	R	N	R	I	D	L	A	I	T	K	D	G	.	.	.	.	I	G	F	R	E	.	K	W	W	K	I	V	D	I	D	E	P	.	V	F	G	K	T	S
Template Known Secondary structure		T	T	T	T	B																		S	S			.	.	.						S		S	S	S		B	S								T	T		.	.	.	.						.		T	T									.		S		T
Template Predicted Secondary structure																												.	.	.																								.	.	.	.						.												.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.											.
Query SS confidence																						.	.	.	.	.	.	.											.
Query Sequence		N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V	L	R	H	K	.	.	.	.	.	.	.	L	F	Q	I	D	Y	L	T	T	L	.	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	R	A
Query Conservation																						.	.	.	.	.	.	.											.
Alig confidence																						.	.	.	.	.	.	.											.																		.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		R	E	A	I	E	R	L	K	E	F	I	E	E	E	K	I	S	V	W	N	I	K	K	D	E	G	F	L	R	Y	M	V	L	R	E	G	K	F	T	E	E	V	M	V	N	F	V	T	K	E	G	N	L	P	D	.	.	.	.	.	.	.	P	T	N	Y	F	D	F	D	S	I	Y	W	S	V	N	R	S	K
Template Known Secondary structure																T			B	B	B	T	T	T	T	B		S										T	T	T											S	S					.	.	.	.	.	.	.		G	G	G			S	S									S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		157	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		T	K	T	K	I	.	E	L	D	Q	D	Y	I	D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V
Query Conservation							.
Alig confidence							.																																																.	.
Template Conservation																																																							.	.
Template Sequence		S	D	V	S	Y	G	D	I	E	R	F	W	G	K	E	F	I	R	E	R	L	D	D	V	D	Y	L	I	H	P	N	S	F	F	Q	T	N	S	Y	Q	A	V	N	L	V	R	K	V	S	E	L	V	E	.	.	G	E	K	I	L	D	M	Y	S	G	V	G	T	F	G	I	Y	L	A	K	R	G	F	N	V
Template Known Secondary structure		S			S											S							T	T							T	T	S				S	B																	.	.	S	S						T		T	T	T								T	T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	S	E	T	E	K	M	V	Q	.
Query Conservation																																																																																	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	F	D	S	N	E	F	A	I	E	M	A	R	R	N	V	E	I	N	N	V	D	A	E	F	E	V	A	S	D	R	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	K	G	F	D	T	V	I	V	D	P	P	R	A	G	L	H	P	R	L	V	K	R	L	N	R
Template Known Secondary structure						S															T	T										T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		S								T	T		S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
			315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	V	E	R	L	A	L	F	D	Q	F	P	Y	T	H	H	M	E	C	G	V	L	L
Query Conservation		.
Alig confidence		.																							.	.
Template Conservation																									.	.
Template Sequence		E	K	P	G	V	I	V	Y	V	S	C	N	P	E	T	F	A	R	D	V	K	M	L	.	.	D	Y	R	I	D	E	I	V	A	L	D	M	F	P	H	T	P	H	V	E	L	V	A	K	L
Template Known Secondary structure					S							S												T	.	.	T												S	T	T	S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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